Scaffold Ga0070697_100050251

Overview

Basic Information

• Taxon OID: 3300005536
• Scaffold ID: Ga0070697_100050251
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3384
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022846	Metagenome	212	Y
F047595	Metagenome	149	Y
F095252	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070697_1000502512	F047595	AGG	MDFAIGSNHYRNASNSIEIDGLGQFSFEHNRRYNEMSLRGFVYDKKGNLVGKIAESSLAINIQGEFEVRPEPSIVKLLRRETEEVLLEVKFQDRDHVQIHKAKLYSVKGRPFEVTPKHWKLGDEAPHSGEDVDCGGNAASLK*
Ga0070697_1000502513	F022846	GAGG	MPQASPEEVGRELSDLAFGIIEQNWLEQHVGKIVDLKSLDQLRLNVAEWELTYLILFAITNGCGTFSAMDPARTTAILKTFHSMLFSHIAEQAGKDVADEHKKNLPARYRLYGQALEGEDMNKPYKTPYRLLGEAAALQIVGQPLTDPHDADNFREAMKVIFTEVREATIKVMSFQQAQAIEGKA*
Ga0070697_1000502516	F095252	AGGAGG	MKRSLLLIALVTGFIFAASSVFANPALLKKRHEGYPNPDGGTTATGEKAALKSAEDAPKVLKEQNKAAEGDIRDQDQIKHNEGSRLPEVVAPHHVTGKGVTENQIKEATKVNANPK*