Scaffold Ga0070697

Basic Information
Taxon OID	3300005536 Open in IMG/M
Scaffold ID	Ga0070697_100002894 Open in IMG/M
Source Dataset Name	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0070697_100002894 Open in IMG/M

Source Dataset Name

Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13197
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (81.25%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

13197

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (81.25%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan: Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan: Kellogg Biological Station

Coordinates

Lat. (^o)

42.3948

Long. (^o)

-85.3738

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002133	Metagenome / Metatranscriptome	590	Y
F002161	Metagenome / Metatranscriptome	588	Y
F002500	Metagenome / Metatranscriptome	553	Y
F007213	Metagenome / Metatranscriptome	355	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070697_10000289411	F002133	GAGG	MAILVRVPPQILEDLVGAAISKQGNIYRGELAKLIGASKESLDGKTSLYLISLMKLCGLAEADMAKVLKKSRIVNQRGAVTRDISAGEELKGVIDNALEGFQMLISESFKPVGPESQPLPNQQPMKRKSDEDPKN*
Ga0070697_10000289414	F002161	GGA	MAARTASHTGHSDIHTGQPRIKVPYSKNPVFVAEGYKPPVVAGRSFEYETTPENVDYWQTLSLAYRQYLKKEADTRAIDLRLLIDERRSGAFRCVGCSKPMVMRELFANGDRVYQCLNGDCVKRIIRYQYQAQTGRIVEVA*
Ga0070697_1000028942	F002500	N/A	LPITFDDIELSVIAAFIGLAVTLPITYLIVDRIIDNNEKKKLVPIEKLAKERLRSKLGVGFLTTFLITLVIDITSASREKSPIPKDVLLLHIEKLKTAQSDLETLLGVYSNVLDVEIARMTNDIVLQIEHLQEDFEYLAETQPRPPTQSHASHMEQVLLKTVHLTKEELIALGTDNAQIHALEEWLTQYTRETRPLAKREQPIAVRGGHTI*
Ga0070697_1000028945	F007213	GGAG	MGSSVRDVVYDHLRRKGIAESEIPAQFDDVVKALNDSFGGSARVIVYKTLVELYQQYSMRVDFTYQDSLRDHLSMLRERVVVDHILPRRIQREDLSLEGRLPFVQSIAGSSAR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070697_100002894

Overview

Ecosystem & Geography

Associated Families

Sequences