Scaffold Ga0070697_100002521

Overview

Basic Information

• Taxon OID: 3300005536
• Scaffold ID: Ga0070697_100002521
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14093
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (73.68%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014601	Metagenome / Metatranscriptome	261	Y
F025249	Metagenome	202	Y
F028763	Metagenome	190	N
F042818	Metagenome	157	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070697_1000025211	F042818	N/A	MLALAQRRHAHSARTVHSVVDDELRVSTHKSIIKTLGRQYADSAQFFVELVVNSWMWGEATKVEIRIPESGSTIEYEEWGNGMDLTGLREFLTKGKLTDEGFSPKYKRPIRESYGMGSLAWLTVGRDLE
Ga0070697_1000025216	F025249	GGAG	MNSLSLGLTTSSAENRDTSTGSDTRAPPPSVFGIIVVGLLTGLVVGLLIGPSFTLQGFFLGFAGGALITAGLYFYTSGRSRPSR*
Ga0070697_1000025217	F028763	GGAG	MSEEARSKRRIALGVFAIIMGCISLVGLSSTSYYFGLGIFGGSYGAVMIALGVALIAKKEAIT*
Ga0070697_1000025218	F014601	GAGG	MSGSTGENRRPSPIPRAILAGLIAGIAAGLISYYAINSILGLIIGFIAGAIVGSRTVLLMQKAREQDQ*