NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070697_100001774

Scaffold Ga0070697_100001774


Overview

Basic Information
Taxon OID3300005536 Open in IMG/M
Scaffold IDGa0070697_100001774 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16475
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (56.25%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002266Metagenome / Metatranscriptome576Y
F005236Metagenome / Metatranscriptome407Y
F023303Metagenome210N
F030713Metagenome / Metatranscriptome184N

Sequences

Protein IDFamilyRBSSequence
Ga0070697_10000177412F005236AGGAGMGFLSIMGKILIGLAMLTLPVAVSLILVFSETLTTIGVAISLGASVFVFFCGIYAGFLGIKYEQLQQKFESFVNPLRIRPNAANLIKAICPIDHEQVVFVHVSPHRDDARPDGLDIFLGSCGHEVHRGEVEIGQPARTASS*
Ga0070697_10000177415F002266GAGGVTRIFRRTKTFVSGKLWPILDSIVKHHQDPATKRRILSNTELKILETIEKEGAIRTDHLRKILKLEAKDSNSKFHRSLRNLESYALIVGAEDPHPEKHLHANIWQTWDARTHEAKVRDSLSYGEALAKLLVKTVDACVLAREDQIQRWFEWSSDMQAAMKQALQDGAIQKLDRYVISSKL
Ga0070697_1000017745F023303GGALVIALIGTLATSLTSFLLIVLGRGGPSLAGYGVGSISLFAFLLTIQVLHGKSESKDDFVKKGAVRTAIATSFTVAYLMLLALGLDSGLGLNLNNGILANFHLVYIFTIGTYFVTASLERIVDLVKGKSSLFG*
Ga0070697_1000017748F030713GGAGLTEKKRLPPWEEAKLVFKMQEETRKRKLLEKDMQHRQGWAKRIGPNTSDELEENRKRLRDLQKRLEQE*
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