Scaffold Ga0070697_100000022

Overview

Basic Information

• Taxon OID: 3300005536
• Scaffold ID: Ga0070697_100000022
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 132993
• Total Scaffold Genes: 136
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 102 (75.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004003	Metagenome	457	Y
F004186	Metagenome	449	Y
F004754	Metagenome	425	Y
F006952	Metagenome	361	Y
F028755	Metagenome	190	N
F079138	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070697_100000022106	F028755	N/A	MNLGLGCSGCVTLLGILLSLTIVGIHLGFPLVVIGVLGLIGFGVGRAVFREPPTY*
Ga0070697_1000000222	F004754	N/A	MPRIVGYVGDGRFGPNTAEVEAFFHRLRHLTPSEWEQLTNAAPGAGSIPDLEIKQSPEYFKALDAATRAAKSEVFPGSESAFYDAMRTAQLVADASAFQPSTRPEPASSAIVDEERLSPEAEADAITRIMSTAYEEEAWRRVMNACMVAAGALVIRDFLPGEQFATLYLPFNGLEPATRRDQERKQGRGSL*
Ga0070697_10000002257	F079138	GGA	MAIAGEHRLAVRHGHRVERRKRRRGARSTALWLAAVAAWGLLFLTLGWLVAAGVYGLLVNP*
Ga0070697_10000002273	F004186	GGA	LWRRRPRRWCRAKLQPPRALLLLAVSVLTAACGVPTPAPPPTAKEVLAKPQQSNLKDAHFIVSGKIASNAVTVQLVGDGALVYRPRPAGRFKFQTTVAGQTVTIEEISLDGTNYGLTPASSKWTATKSNSGIDPNAFAGASDQKYIGEETLPQGKAWHATATDKDGNAFDAYIRESDGYPIKYVETQTGGQNITLMFDRYNAGETITAPPPDQVQAG*
Ga0070697_10000002274	F004003	GGA	MRTVLRLAAAVVGAGLLAACAGPGAPSGPPSPQDILGKPMHASNLKDAHFLVTGKFASAGGTVDLTGDGALVYKAPGAGRFEFQTTVAGQLVSFEDISINGTDYTRTVPGNGNGKWDARSSTSGLGPNSFTGTTGFKYIGEESLPNGKAWHARAKDKDGNTFDAWIRESDGYPLKYVITQQSNALTLTFDKYNSGESIVAPPASQVVQG*
Ga0070697_10000002276	F006952	GGAGG	VIGPLATANHEIREADRRDQERRLARLAEPRRLTDRLLGQLEELNLDGVGIVPDSYEPGLAELRDHLVAWPRVGAGLIERLQSGMPTADLIDTVFTIQEVIAPPTLPAETEAFEEADPI*