Scaffold Ga0070735_10007005

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0070735_10007005

Scaffold Ga0070735_10007005

Overview

Basic Information
Taxon OID	3300005534 Open in IMG/M
Scaffold ID	Ga0070735_10007005 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9040
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (84.62%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012495	Metagenome / Metatranscriptome	280	Y
F084683	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070735_100070052	F084683	GGA	MNPLETILSWSTLSFELILCGFVFIRRVDRVLPFFTAYAYALLGSTIGVWLTYECFGFDSNAAYFAYWISVLVNAAARSLAIVELCRYGLQAYRGIWALVWRFLTGLSVVLLAHAAVDAWGQPRGLAIYGATLDRDLALASIAVLAALFLVRYHYSLDVNPTQRLIAAGICLICAVDVIGNTIIRKLFTGYLFSWFLSSQEAQASWPSVRPQFMHVADIWSAVHLFFFMLSMGIWSFALRKPLLEQSERPILLPAGIYQELSPAINLRLSAFNDRLVELLKP*
Ga0070735_100070053	F012495	GAG	MTDLVIFIPLAIGLLGAMGWLLAVKQKPAGPSAGISAADALEAFSTERHYAHFRQIRQALSATDAEYLAANAPPEVARRALRERRAVARGFLKGLHEDFSNLARLGRIIASLSPQVSRQQETERLILSVKFQLLYSVVWLRLSAGNLPLHQLEHLTGLVGRLATRMDAAMAEISALSAGQVARSIET*

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