Scaffold Ga0070735

Basic Information
Taxon OID	3300005534 Open in IMG/M
Scaffold ID	Ga0070735_10003488 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13753
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (93.33%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

13753

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (93.33%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Pennsylvania, Centralia

Coordinates

Lat. (^o)

40.7999

Long. (^o)

-76.3402

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001432	Metagenome / Metatranscriptome	696	Y
F033311	Metagenome	177	Y
F044616	Metagenome	154	Y
F047848	Metagenome / Metatranscriptome	149	Y
F074076	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070735_1000348810	F047848	AGGAGG	MDYVHVFVLRTLCVDENGEVKNRNLAVTFDMFEAEDHRNKSVENGYDTFVVPGDWREDQ*
Ga0070735_1000348812	F044616	GGAG	MRSTSSEKIECPLCSGAGELSRAEILDRLGVKDFARVAQLSAEEAFRLLQNRHDREHQSAWSRFEMELAKRTAEVREQHKDALRSAQSERDDLVRRVENCLREVAHLRERNQQLEAEMAKVARVGKREEMDFAEEARSWAGVWISDKLPRNGDFILSYRAPNGEPADPKILIDNKDKSTVAEGDIDKLVRDAKERSIPIAALVAREESQLRLVDRESRWSRKDGIWLLRTTRQWLPRDLDVLKPVFERMRVQGFDVLERNAVLAEELRRTFPEIDRIDKELGKAAKAILSVSALVVRYRERLREICNSSTPSRISPAPEQKIGMPIAPQYQEESGR*
Ga0070735_1000348813	F001432	GGAGG	MLKKDFIRDGNRRIIGSVTTGYSDTSKTVRDDQNRIAGRTSDLFNTVRDADGNFVSLNSSDPGLLIRKK*
Ga0070735_1000348814	F074076	AGG	VEPANSCPRFVYSDWRRDLTIRELIEEQRIRLQSSNPAERLAAALLTPAELKRRMRLLRNSEIGQLLEDEVWSNLSLLSPDATICMEAADRLRRPTLSQE*
Ga0070735_100034889	F033311	GAG	MREIAQAFLAQGKTVRAAALMLKLIKTEPTPENLELLAEIYMRQGLCDDAAVLYLRVVKAGLK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070735_10003488

Overview

Ecosystem & Geography

Associated Families

Sequences