Scaffold Ga0070735_10002081

Overview

Basic Information

• Taxon OID: 3300005534
• Scaffold ID: Ga0070735_10002081
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18448
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000042	Metagenome / Metatranscriptome	3762	Y
F000272	Metagenome / Metatranscriptome	1408	Y
F001851	Metagenome / Metatranscriptome	626	Y
F004586	Metagenome / Metatranscriptome	432	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070735_1000208113	F004586	AGGAG	MTTNEQNKCAHLPCECLAQPGEKYCGQACKEAGSSEVEIACQCDHGSCPLTA*
Ga0070735_1000208119	F000272	AGGAG	MPQTIAEKTADQIAESVHQASRVTSAVADAIEDGVGVMKRAAKQGGDAAEEILADTAQRLQRHPLLTVATTFAVGFTAGAVIGWMIKQR*
Ga0070735_100020814	F001851	GGTGG	MNATGISFALLVVLSTILLLRWMRRLKPQLAGLQSQRMCPSCGLITSRLKARCLECGKPFIAVLHSTPNK*
Ga0070735_100020815	F000042	AGGA	MKNIKFVVRVNRGGTRAPQYVQRIDPTPIHMTTNRKLALLMGRFTAEDAVESLRNSRCIPELELVQVSA*