Scaffold Ga0070734_10072787

Overview

Basic Information

• Taxon OID: 3300005533
• Scaffold ID: Ga0070734_10072787
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2041
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005822	Metagenome / Metatranscriptome	389	Y
F011771	Metagenome / Metatranscriptome	287	Y
F014867	Metagenome	259	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070734_100727871	F005822	AGGA	MPVNGAETLVDTKTTQPPVGDGRNSRATADSKAPSSRGTTTRRRRDRQDNSKGSGEERFFLASGSGHGDVPALGRECASEAEAIIDAFRERVNFFRVAEFQTRADVAPSGEPILRKDGLKKNNPAS*
Ga0070734_100727872	F014867	GAGG	MRSFFPSSYDRADVLMSAGCSTFFSAALILVIPRFGILLLEILFGLFFIGCALVARTRLRRRALGKDNAATSRNTRARWFDRYDVLMIVAVIVVQTCTAGLLRKAGLSEGTVDTLPLILFAGSILLKPRAMEFLEGRKKTQQAARTCTDPPIQSLGAVDNREALRPTVLSLAAKDGDLE*
Ga0070734_100727873	F011771	GGAGG	VIDPKLTHKGENRTPSVMARFGGLDQLDWLMIVASVLLGTIAKQHHFLNLPDGFLEWILPFLLMAAGYKARGVAMELIESRRAKTKSSTGE*