Scaffold Ga0070734_10007205

Overview

Basic Information

• Taxon OID: 3300005533
• Scaffold ID: Ga0070734_10007205
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9040
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007234	Metagenome / Metatranscriptome	355	Y
F035522	Metagenome / Metatranscriptome	172	N
F070440	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070734_1000720510	F070440	GGA	MRVVGAALCAGAALAFGAGGYAVFADQRQPAPLRVSELPGTYELVDRVLVGGKVLRRPDIAALYTFGNGRANFNLFVRNADGTLASESSIIRYTLSEEEYCEWVEYTTRNNLDAPGVTNEAPPVSSHCTPIKRKGAKIVFAPPGESVTTTYDRNGFAAVIKGQFTDHWRKVN*
Ga0070734_100072054	F035522	N/A	MFKAYKARLPALISFLAIALMPVVLHSAVGSGGRSGKILSILGTWTGRWTNANKITTGTESFVVQTQEGSAITGFFCWDIAKDPATCSSHINDYESWIGTIDATGTLVITGQLGDYPAKLSLDGASISGTYQNRRIASHAGTWGVQRPPLR*
Ga0070734_100072055	F007234	GGAGG	MQSVRMWCRVHRISKVGELLESYILQSTVVPTGSYQIREPTSVPRDVRQLVTDAVKDGRTWSCWAHGLHIWLFTCSLSPLSRKSGVPVLQVSLYGDHGELRDHGTWIPDQQGKWCRSAAAPAGS*