Scaffold Ga0070734_10001161

Overview

Basic Information

• Taxon OID: 3300005533
• Scaffold ID: Ga0070734_10001161
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41239
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (73.47%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000585	Metagenome / Metatranscriptome	1007	Y
F001949	Metagenome / Metatranscriptome	613	Y
F002584	Metagenome / Metatranscriptome	546	Y
F007872	Metagenome / Metatranscriptome	343	Y
F020595	Metagenome / Metatranscriptome	223	N
F052792	Metagenome / Metatranscriptome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070734_100011612	F000585	GAG	MNHLAKPRKAEADLGRQSQQLAKDECGLVAPDRLAQTITEFVEWRAFSYWLRLTVETQGFVSDPMIAILRERCPGFLDYASAFAKEHPREPEFLWLRFLEWTDERLFHVSIAEGWRHALGYYATRDPRMDQIRAHWKQCRREWKLQPPASLPSFEAWRESALQRR*
Ga0070734_1000116133	F052792	GAG	VDVTADSLFEAAAVAVRAFREGALVEELPVPGTELRITVSPLPVEHRVRLQRVEQWAQTGTVKSPVEMLRRERVRELLGLKNEAVGRAGPR*
Ga0070734_1000116142	F007872	AGGGGG	VACCRGPSSATWPQSIRSTLPTEMAMPNRDLIRASEIADWCFCRRSWYLSARGVGPSLVQIEKRHAGVDYHQQHARSVNQARGVMNGATRALLVAVLLAAVYWFWAYSR*
Ga0070734_1000116146	F001949	GGAG	VSYFNLEFNPQMATSLVHCLNRRYKGAQKFPVTAPDAQGTLIVWARDPQECREHLMNALFDLIFARNRVGAAVTNPPCIFCGGKTQSRGRNSSGTRAWRCMNPDCQRSFVIDRTFRGGINHPTQSKKPAFYQLVFVDGKTIREACDALGISMSAGDNWYQKMLAVRKRIDHKCPCGKELRHRGACRFRQGYETAKGNAHESLPRTSVPKAQGVRATSKI*
Ga0070734_1000116147	F020595	GGAGG	MACPDCDSPAGDLRFATSVETHGLDCGPYETFNEEFIVCRECGGRYDVREWDGTQEVREIRIPSDGIETTAVRLNQLAAG*
Ga0070734_100011615	F002584	N/A	MPVKPPPSLGPDSCGKLSDGFLHVSGHAKETVRRVRAYLRGRSSPDPKSLANETKALTPAQWSVALPEQRRNGKVVYLDRASLERIADARPDPLETVYRQELVSLLEARLPPEQVPYLDAFLADDEPKDIAPRLGISPKAASARMRRFQAKLAKIYAGLTPRIKASH*