Scaffold Ga0070734_10000865

Overview

Basic Information

• Taxon OID: 3300005533
• Scaffold ID: Ga0070734_10000865
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 51912
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (75.51%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000612	Metagenome / Metatranscriptome	985	Y
F014776	Metagenome / Metatranscriptome	260	Y
F024432	Metagenome / Metatranscriptome	206	Y
F026728	Metagenome / Metatranscriptome	197	Y
F031990	Metagenome / Metatranscriptome	181	Y
F038885	Metagenome / Metatranscriptome	165	Y
F099764	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070734_1000086510	F014776	GGAGG	MKVTLNPECAVRKLSDCEDGNDQGPGLKLDRRHLIKMGAASVFATLLPIRPLQAQSEPQSCAPAIPQNHAPSNGGSCPYPIPWLDKNGNHNQSPMPNVELSNIYHFKGKLARCNGFHGMGTDNKGNRLAWGNPTTDYSYMAGEYWAARQTHQAIFAHT*
Ga0070734_1000086511	F000612	AGG	VTPVPDTGLTFTADNKIATLQMTNVPIIDQPRWPAMDAETTPAFMDFKLVFKATDQPVKYEDAARQYRFEGFKATAQLEAAFRVPSIDFSFKTDPLETSSCDFAVMGSGVNGKYYEAVKSS*
Ga0070734_1000086512	F031990	N/A	MSTIKRYLRWAVLGLIFVLTASVNLFCVVIDNDDDGDPTTGLTIEFTAVQGKRIQIASPVHLKSTLALKVFRARFFHKQRVERSNELNTNSSFSNLIDLLGPPLRC*
Ga0070734_1000086513	F099764	GGAG	MGRAKRNRQLSSKELMQLTIWGGLLFMILLGLVYGLVRAGAVIPVGSGVERHAATASHGNTADSHP*
Ga0070734_1000086515	F026728	GAG	MTHRRSALRATIVTTMNSLLIKCFRCAVLAMMLLLSGLASMVCFSYDADGDESTPPVTIEFNGVVPSKKSIQIPKPHSTAAAQHVSNEQPASIELLVASNDSSSTPLRDKESPQLLVPLRR*
Ga0070734_1000086530	F038885	AGGA	LVAAKQAPEPPNTRLSVGDYIADILLDARPNGTLYHWIVQRVGSAAIIQWGQEYTFEDAYSAVSSYLENLANPQQEKA*
Ga0070734_1000086540	F024432	N/A	MKPLLTRYLRGAVLGMMLLLSGMAGMVCFSYDADGDDSTPPVTVEFNGVVPSKKGIQVSSPRSNTVAQHVGNVQSATIELLASVSYLSIPAMDMDKGSPQLVVPLRR*