Scaffold Ga0070734_10000343

Overview

Basic Information

• Taxon OID: 3300005533
• Scaffold ID: Ga0070734_10000343
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 106776
• Total Scaffold Genes: 97
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 75 (77.32%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001564	Metagenome / Metatranscriptome	670	Y
F011110	Metagenome / Metatranscriptome	295	Y
F078487	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070734_1000034344	F001564	N/A	LCPDAPDGGRCDHCPQDQLDSAQTSEAGLLIRRALDLRAALNLGIHIGLDDIRADEFYAMLILDDERDQLDRERTGTHGK*
Ga0070734_1000034347	F011110	GGAG	MTEFVYMRAPWGGAEVRRVEATPEVLSPLMISGWTQCDPPANAEEVTTHVHD*
Ga0070734_1000034350	F078487	N/A	MAAWSQQSGLANAAILAAFGQPVSYQQGAVDPFTVIGILDRRTDEQRHPDTVYARLFVALSSFSVPPNHGDEVTVDGELYTVFEVLNDPAGGCWLSIREKL*