Scaffold Ga0070734_10000197

Overview

Basic Information

• Taxon OID: 3300005533
• Scaffold ID: Ga0070734_10000197
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 161643
• Total Scaffold Genes: 158
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 110 (69.62%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000138	Metagenome / Metatranscriptome	1954	Y
F003916	Metagenome / Metatranscriptome	462	Y
F008200	Metagenome / Metatranscriptome	337	Y
F054948	Metagenome / Metatranscriptome	139	Y
F064949	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070734_10000197112	F064949	GGAG	MLVFESLSAGAIAIGIGLASVLIVIGLYSVVVWPLTFWDMASLGLEKYSSWTNTILWSIFAGGSLAGYWCFSGAAFRDRSKNKRSAPGRSPR*
Ga0070734_10000197138	F000138	GGAG	MHMQIVNQFHAPFSTLISYIPVIATIVTTFFSIVLARATLRYVEATDKGLALAREEFEREWSPDLHIKMERISSSEARIIVTNLAKTSVLLQLLQLRKLSHAMPFERCRVNDPLVGGMTWTQEMGRRIIACTGHEFDGPIAASMTFYAAGRMYRTDWFRSQIQVRDGRIIRLEPSNMPTRRVRTIERKGPERRREFAQDVLGDAEPQKGESKPDEQFFVTGA*
Ga0070734_10000197153	F003916	AGGA	MNRLTGALIAYVVLGVLTYLTIRDPRIKGITLAVLALFAVKSVLRRKDVLHPDKSGEQE*
Ga0070734_1000019738	F008200	GGA	MTEFAILTNRKRALIALIHSVVFLGIASQGFVSPKAGLLHAVRTPDMVLAGIYVIVAVILAWLVGISRGIRERLYFALCVCSASSGLLRTVFGDAALPAAQYLRVGMLVSAVCVGTWIWRSFGRVVADAVPD*
Ga0070734_1000019749	F054948	GGAGG	VPYDTDYYWVVSCKNRRFHHKNNTSYEHLILLGETDSFASPPMLPELLKVRCDSCGEEHSYKRKEVLRAEVGVPDQFAPHPAFK*