Basic Information | |
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Taxon OID | 3300005533 Open in IMG/M |
Scaffold ID | Ga0070734_10000118 Open in IMG/M |
Source Dataset Name | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 225026 |
Total Scaffold Genes | 222 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 155 (69.82%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire. |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Pennsylvania, Centralia | |||||||
Coordinates | Lat. (o) | 40.7999 | Long. (o) | -76.3402 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F000978 | Metagenome / Metatranscriptome | 815 | Y |
F001287 | Metagenome / Metatranscriptome | 731 | Y |
F003854 | Metagenome / Metatranscriptome | 465 | Y |
F006810 | Metagenome / Metatranscriptome | 364 | Y |
F007490 | Metagenome / Metatranscriptome | 350 | Y |
F087522 | Metagenome | 110 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0070734_10000118127 | F001287 | GGAGG | MRLMHLCYAAVGFAVARWIFRRQAMPVVDPVSRFRSQGLL* |
Ga0070734_10000118214 | F006810 | GAG | MKRMLLCVLLLVPSLVPAQTRIRRQGTIIRMRMADCMESGRGFVSAMSGAPKNESVGQCPEYVLVADTVVYVISGKASEQLLPMAEVTRFRFQKNEMLIRIDDASRESHFRIKAMFLRPEWERNEKIEEAEANAIISRHLDPTAMRTR* |
Ga0070734_1000011833 | F087522 | N/A | MIRLTIHHRTQVTMMPSEAIPRRLGHISFAFSLALLAAFASAQTESPSRANTAPKKLLLQSELKEGEVLRYELDAAGSFLPTADASGAILSPPRGPCDYAMSAIVTLRPQPPDKDGNTPVEARYSETRMTSVRCTLFSSADFERRLTALQASTVMFRVGPHGETVMRHDQDGYFKYWDGGDLLRKVTQDLLQTEFSPRPVAPGTSWQARGQFAYSHDRALKDLELSGSDLRFENMVQVDGKSCAWVTSQYVFSPVDLPAVGTASGGRFIPAAGNNAVAAVLHISLLLDPESHHVAWLHRTQTIDNKLTLASPFDDSDPPDDPDETPGADGENPMPDLSSMRSDNPGRYPFMTFHFQEEARARLLPDQRSSEWLAGLKHFEGTPEPATGTTPVPVTKTLLPSPIVQAAKPEMVKRTSHVVIDSDSLGSTPAGFTRFEKGLCRDTWFCATASIAMPGDVQITEDTPLHTVYLAQWRDAELSIAIGPSLDRRHLGLTEDEELNKQAEYYLANYVWLALKPGIATNSSSATLDGYPGMIVDFRATQRDMADMHGVLGLILTPWSKTVPISCTSDRTFTPELQAVCEKIITSVSLRR* |
Ga0070734_1000011836 | F003854 | GAG | MRAFLEGAKEAFMLAARTRLHRNHYFHFHPLHTLFSLLASLILFGLLVWFLVVPAR* |
Ga0070734_1000011868 | F000978 | AGGA | VQPIFCLRCRREIETGHKSVAVYMFAQTVGVKPRQKSSAQRICFCPQCAVSLAMGLPPEGALNMAAWEMIRDLVSAEPSLNEAAWESLRGVVALLGTGDSEPEPASRYRRAG* |
Ga0070734_1000011874 | F007490 | N/A | MKAVAIKKGQARERAPGFVEMGILRCDGCGEEFALFQDPGFTDKAVAGRQAHWLEKVLADEHERGHSHADRIQLPD* |
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