Scaffold Ga0070734_10000098

Overview

Basic Information

• Taxon OID: 3300005533
• Scaffold ID: Ga0070734_10000098
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 240631
• Total Scaffold Genes: 222
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 159 (71.62%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000136	Metagenome / Metatranscriptome	1961	Y
F000238	Metagenome / Metatranscriptome	1494	Y
F000359	Metagenome / Metatranscriptome	1236	Y
F001517	Metagenome / Metatranscriptome	679	Y
F017861	Metagenome / Metatranscriptome	238	Y
F023389	Metagenome / Metatranscriptome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070734_10000098146	F000238	N/A	MAVQARQPRWYTIPVRVLLVTFVGTLLSFALSLLLGIVGTVVMAAIRGVHPRMADAYRQIALPAGITAGCIIFVLALVMEIRHHRQAKTLAAIARMS*
Ga0070734_10000098151	F000359	GGGGG	MSGQVILYFEDQADALRFALAAGSVMAGDADRMSDNLIQETTRVSRIRLDAANAGNTGKTKKPNGGHAA*
Ga0070734_10000098161	F017861	GGGGG	MARGRATIVESALLLALMGILAGAIGGLAVGVATSPKPAATAAH*
Ga0070734_10000098179	F023389	GAGG	MKAFCTWALRTVLPMLIFAGACLSLAQDRGAQPSVLHIQQSVTTSRPGFPQYLSTYQVLGGAQSSAVALALEGTISLKNFTPTFSEVLWLLAYWKGKCPENDQRLIGANFIWSDILKNPALGDSDLHIDLQFPHPLPMTGCVGLVFAGGPLLEGGSTMSADLNLTYQASGPIANTVLDVSGEYCFGQSWGCQNATPDDAMGFGVPVQLPAGHLVELFGDISDSTFDGTRYYGPLPSGKSWGAINDFYLLPGGCGQFGQNLNNMGFPNPALLSVMYGWLPDNAVLLASVPLEYQIPQGQSKAALQSTVEKIFPTPIAVNAGDCLVVIYGRSGDGATDNETQVHALMAP*
Ga0070734_1000009843	F000136	GAGG	MAKSAKLKILYGEGDAQEQAATAAAFEKAGHTVEKAIGRKAVQSALDKGGFDLIVLGPSLTRNDRHHLPYMAKKAQAEISVLVMHADGSRHPYVDACTDTGASIENVLARIESMTIAGMMPRTAGAAAGR*
Ga0070734_1000009867	F001517	AGGAGG	MTKENQPSLATDQSWVLSTLEHDQLAKAKKHPIPRRRLKGFELLILWAFRLYLLFMMVVVGYQVWTAAR*