Scaffold Ga0070734_10000056

Overview

Basic Information

• Taxon OID: 3300005533
• Scaffold ID: Ga0070734_10000056
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 329696
• Total Scaffold Genes: 319
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 250 (78.37%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000042	Metagenome / Metatranscriptome	3762	Y
F000595	Metagenome / Metatranscriptome	999	Y
F000978	Metagenome / Metatranscriptome	815	Y
F005269	Metagenome / Metatranscriptome	406	Y
F009101	Metagenome / Metatranscriptome	323	Y
F010204	Metagenome / Metatranscriptome	307	Y
F018587	Metagenome / Metatranscriptome	234	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070734_10000056231	F000595	AGGAG	MDGITGLAAVIMLFGMPMAIIGMYTFYRVRKLRTEERLAAIQRGVNVPMEAELSQAASSRRYGILSIAGAVGYMVAFSIIARYEPDALMAAAFGAIPFTLGLGFLLDAFLIRRDMHAA*
Ga0070734_10000056315	F009101	AGGAG	MKRAIRMAILTVGLVGTFVGAAVQQVPAADGGPILLCPPKTPTCKPDLPPMMK*
Ga0070734_1000005633	F000042	AGGAG	MKNIKFVVKVNRGGLAPAFVQRTDRTPVQMTTNRKLALVMGKLTAEDAIKSIRNSIGVPELVPVQVAV*
Ga0070734_1000005640	F018587	AGAAG	MDTVLQPLFVRARSLRAFMAASLRKILRMEPHDGDFASQRVCPFCGLITPRYETRCLECGKALKPA*
Ga0070734_1000005641	F010204	GGAGG	MRSFWQQTGILGPIYRLVGEGLNDADIALKLDLTQAKVRGCVAWIVRFLELKDRQELMLYASTAA*
Ga0070734_1000005655	F005269	GGA	LDLVANGFLLTINDSSASYAIIRHNVRTYRSDGVIAVIRGRQNAESELKKFEDAQDSSDRHEGWRYFIEKIDLKAGTDPAEATQHRQAQLEGRESKALAETKPPNFPSPDRER*
Ga0070734_1000005670	F000978	AGGA	VHPIFCLRCRREIEIGHKSVAVYMFAQTVGVKPRQKSTAQRICFCPQCAVSLAMGLPPEGALNMAAWEMIRDLVSAEPSLNQAAWENLRGVVALLGSGDNETAEPRTKFRRAV*