Scaffold Ga0070734

Basic Information
Taxon OID	3300005533 Open in IMG/M
Scaffold ID	Ga0070734_10000047 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	353181
Total Scaffold Genes	320 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	201 (62.81%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

353181

Total Scaffold Genes

320 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

201 (62.81%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Pennsylvania, Centralia

Coordinates

Lat. (^o)

40.7999

Long. (^o)

-76.3402

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000954	Metagenome / Metatranscriptome	822	Y
F001548	Metagenome / Metatranscriptome	673	Y
F003916	Metagenome / Metatranscriptome	462	Y
F009349	Metagenome / Metatranscriptome	319	Y
F011166	Metagenome / Metatranscriptome	294	Y
F017448	Metagenome / Metatranscriptome	240	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070734_10000047111	F000954	GGAGG	MRRSSSPSFDTTQILAQSVSDNVLARRFPLKKTLPICAAVILAPIILVGVVAVAANEWRPIGTTAGGDQVLVSAVRAQKNGMRTAWVRVEYKEPTALPQGGSFVELRARVRFNCSNGSAVPNWEWLYSRDRNGKLVVSKKTRRDDQFGQSAEGGFAGLAKDFVCQQK*
Ga0070734_10000047115	F011166	AGG	MIKISKTVFTWAKNLHRGAALDSLRNVLAIVGGATILADFGTVKAWLLVPMALVAFCVWLIDYERHFRGQNAEDAGSSAV*
Ga0070734_10000047129	F001548	GAGG	MFTLRVIFWTLSMAYTGFILTNQGLRTFNHLSITEAFLGALTGLLLAIMFTLRERRRQRPAFVAHSIANLFPEWGASREKRDSARKFNL*
Ga0070734_10000047135	F009349	AGGAGG	MARVLLMTFLLVCSLPGRLTAQVGIYQRGTVVRMHMGECMPSRHGLVSTLGGGSGPAAQGACPEYTLVSKDVVFLIVGKQSTELMPLAQTIDFRLRKNELAIRVDDAKHEAAFTIKEMMVRSEWDRLQRHMERQMMGSGTDDPER*
Ga0070734_10000047176	F017448	GAGG	MVNDDLVKCPLCGGFTHVGKPELLSALRDPKNRKRVENFIEELLAGGEVAGVAVGVPERRNFNKDVHNWNPNVPVWNRSPKE*
Ga0070734_10000047316	F003916	GGA	VNRLTAALLAYVALGILTWATINDGRIRGVTLAILAMFAVKSWVRRKDVMHKDVMHPNGESDPK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070734_10000047

Overview

Ecosystem & Geography

Associated Families

Sequences