Scaffold Ga0070734_10000011

Overview

Basic Information

• Taxon OID: 3300005533
• Scaffold ID: Ga0070734_10000011
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 658267
• Total Scaffold Genes: 628
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 474 (75.48%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Associated Families: 12

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000655	Metagenome / Metatranscriptome	958	Y
F000725	Metagenome / Metatranscriptome	918	Y
F000771	Metagenome / Metatranscriptome	897	Y
F000949	Metagenome / Metatranscriptome	823	Y
F001520	Metagenome / Metatranscriptome	679	Y
F002926	Metagenome / Metatranscriptome	520	Y
F003445	Metagenome / Metatranscriptome	486	Y
F005420	Metagenome / Metatranscriptome	401	Y
F014777	Metagenome / Metatranscriptome	260	Y
F050313	Metagenome / Metatranscriptome	145	Y
F059309	Metagenome	134	Y
F087516	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070734_10000011201	F000771	GAGG	MKKVLSVSALALSFVAGAALSAQVRDWHDLDGVHKHVNEAIREMERARAANHYDMDGHGVKAEEHLRAAERELDMAVQAARR*
Ga0070734_10000011228	F003445	GGAGG	MAFPENEPTIQRGDPTIQLIDLLVARLEECLGEVLPLETDDLLKDYAQNARNSTASAIEQLRLARARKEQQLGGRTK*
Ga0070734_10000011230	F000655	N/A	MIWWFLILGVSTLVVVCVAIALFVHLRRHLHKAHDGTTDMERQTNQLKS*
Ga0070734_10000011299	F005420	N/A	MRCGIGLALGIVLLVPALRAQAPEPTIYVESFRKGATHIAEDKFEAHLSPADANYRERIKDAAGNDRYELTISPQGPAGDNKITSWRVQLRDLRHNLYSNLLVADQQPSEDAKDNLWWLNPNPFGPVPLHARRIVKVDGFYVIFHVKDIHFTPLDSPYVDSLVVNFEVTNTAPKISH*
Ga0070734_10000011357	F059309	N/A	VATFRSKADMVTKRYVVIGTAWLLHATSWFLPAIKGFLGSRLDHSLPGWEVFLSQTCALRPCGTESADPWYGTAISAAGVVTTVLFVLASPGIVWRGSRRLRRVAAFAATAAFVVNCLWYVFYVPDRSDLGVGYFLWCSSFGLLAIGLFLLAGSNNELESTRQQSVLT*
Ga0070734_10000011375	F014777	AGG	MSAGNKTLIQILAASFALCVTASAQCPLNTLIVKGHVVENANAHSKVRVQLVYPKEKPGEAGEATVEDGSFQIPIEFVTMQSSIFTNLPKRCGRKPKTVVITLLENDQQSDQVFLDFLKNFKMTDPSAYALRSEVVLNGPH*
Ga0070734_10000011382	F087516	AGGAG	LTFCLANATGQAKVLTNDPLTGLPLIPATVLFKNVGNEPDKLSDVQVCKSKGQGNFYSLSNIMNPASGLKMDAAAAWYASHLSGFKKVQGYESGRSQIAFYNSDKTIVILLTGQLGAEGENANAYGVSYERFQPGISEKAIGPNTGQVHLQLIGAERC*
Ga0070734_10000011390	F050313	AGG	LDAIPNGFKVAPVNRTLTHAALLLLVSPVMVCQTQGHAPDCSTLKYSRHKVSCLCGTVQVCSGDICGPPSVYELDDDIAVELRAKNGTILDTQKLVVETREMQGATQDGTKTSYKQTERRFCFEGKQDGDYVLAFVLHKKGIPQPAVIFPTNYAHKRRKSCDSIYMVEPLCPR*
Ga0070734_10000011465	F002926	AGGAG	MSRAKVTSGMWRIDPKKWTRVVDRGGVPVASAEGKADGNANASLIAAAPDMFELLESLEDNKLIPEDVVDEIRMVLRRARGELGLAVFSRNTHRILRGRTREWLKFMEGLWGSDSDQE*
Ga0070734_10000011503	F000725	GGA	MSRASKTLRAVQWALLASILLYVVVGEMIAPRATRIDQTLSYILSSLAVGIVGTIFVVRRTLVLPATASLSSSSEEELTLSQWKTGHIATYALCDALAIFGLLLRLRGSSLQQSLLFYVGGFVLLMFFRPNVPAEPTAT*
Ga0070734_10000011508	F000949	AGCAGG	MSGQDATRSDIWPYCLAAACGIGTGIADVAIDDLLFTALLVLASCMLLGLLRARWPWRWVVAVGAFVPLTELVAYLVLTVKPTRAQIYGSFLAFLPGIAGAYGGAVMRRVVDDLRAGK*
Ga0070734_1000001189	F001520	AGGAG	VNAIKFLVAAYIATWAIHFFYMGTLVTRFRRLQKQRKELGKE*