NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070739_10000628

Scaffold Ga0070739_10000628


Overview

Basic Information
Taxon OID3300005532 Open in IMG/M
Scaffold IDGa0070739_10000628 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)64361
Total Scaffold Genes80 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)50 (62.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003606Metagenome / Metatranscriptome477Y
F005548Metagenome / Metatranscriptome397Y
F007088Metagenome / Metatranscriptome358Y
F020333Metagenome / Metatranscriptome224Y
F021819Metagenome / Metatranscriptome217Y

Sequences

Protein IDFamilyRBSSequence
Ga0070739_1000062821F003606GAGVRPRSANEWRDFWRDGGERELHARLGEFAPYSVRIATLLGSNAPERALVAELGRIREHELGGPPDPETDAAVAARIYAWFEAASLAR*
Ga0070739_1000062834F020333GGAGGMIGVGIAFIIVGIIFLFIIPWVGIAVGIVGLVLAILWVAGFGRRAVERDTPADQPRL*
Ga0070739_1000062847F021819N/AVLAAVPHAVVTALLLVAAIGPVLAFAWFAWWFLRAGKRYDDRERAAGRRPPPGF*
Ga0070739_1000062858F007088GGAGVSRPMQLFLRDPSYTDRLAAFLSSVGRPAVVGAPDRVDLDASADDPQGLELELHLRVWRVLYPDADVELAGLAP*
Ga0070739_1000062859F005548N/AVLRWLLSLFGRGRKHAASSIREAEAYARSYGERSGEIVSVVRQEPKPIPRRTGDMTGELLRLAFEAKLDARGKATT*
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