Scaffold Ga0070739_10000383

Overview

Basic Information

• Taxon OID: 3300005532
• Scaffold ID: Ga0070739_10000383
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 87796
• Total Scaffold Genes: 103
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 58 (56.31%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030536	Metagenome / Metatranscriptome	185	Y
F057559	Metagenome / Metatranscriptome	136	Y
F064127	Metagenome / Metatranscriptome	129	Y
F087834	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070739_1000038326	F064127	N/A	MEEGGPRRSLVGMKRRLLFVLLVTGLLVLALAGWTVQGLRWAASGGWTRPLPQPA*
Ga0070739_1000038381	F057559	N/A	MDYVTGSAVPRIVGDAFVRGERRRELALDSFRGSWLVVAFGVRGADVDELARLEEAFAADGAVVVAATPSDWHDVAERYGASAARFPILTGVDERRQVTLVVDPGGVIRHTGLRRSARETLASLEALLVPAVLAA*
Ga0070739_1000038386	F030536	N/A	VTVRRLVLAAAVVVVFALGVALGEALHDASPSAGTQTLVRTLRPLPLAPAARQTVTITVSKP*
Ga0070739_1000038390	F087834	AGG	MLDEARKLDGEGDFVEFAVAGSPASGEFHCSGCGYGITVRTTLPQCPMCGSTTWEQAAWSPFLRPHLQ*