NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070739_10000035

Scaffold Ga0070739_10000035


Overview

Basic Information
Taxon OID3300005532 Open in IMG/M
Scaffold IDGa0070739_10000035 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)307957
Total Scaffold Genes341 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)220 (64.52%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002509Metagenome / Metatranscriptome553Y
F003246Metagenome / Metatranscriptome498Y
F004297Metagenome / Metatranscriptome445Y
F007034Metagenome / Metatranscriptome359Y
F014125Metagenome / Metatranscriptome265Y

Sequences

Protein IDFamilyRBSSequence
Ga0070739_10000035143F004297GGAMWTGLYAGLGAASTMVSRRLASKIWRVMTGEEPPTKK*
Ga0070739_10000035204F014125GAGVQPEFTLVGDDRIIGSTIWTDEDGRRTERYQVLTIRDGKIVDLQGCETRRQAERFARRRATARTSGAV*
Ga0070739_10000035205F007034N/AMEAILDQLRAAADALSRGDPRPFASLLADDAEWRGVPSGHLWWKRTPS*
Ga0070739_10000035295F003246AGGVTSSTRDTWSAAEAVAGLLAACAIVLGLLELVYRPFRLAPVALLLALIATVMSRSQQRLVMTAFAAIGICFVVGTALQVLTHHPLF*
Ga0070739_1000003584F002509GAGVVTHLSHWLTRQLGNDELRRKLEDVDVDELPPAGRDMVRELVQELGVAVPGERGQLEVLVRETVETLVYGE*
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