Scaffold Ga0070738

Basic Information
Taxon OID	3300005531 Open in IMG/M
Scaffold ID	Ga0070738_10002715 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	25802
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (59.26%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

25802

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (59.26%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Pennsylvania, Centralia

Coordinates

Lat. (^o)

40.7999

Long. (^o)

-76.3402

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025048	Metagenome	203	Y
F030458	Metagenome	185	Y
F031889	Metagenome / Metatranscriptome	181	Y
F041367	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070738_1000271516	F025048	AGG	MLNAAAITDAIAAALLSIPELNTAMGGRITAFHYRLGQEHRLAEAIYKMPAPSMLIAWEGTKGGNFDGQTIWKHRWGIYYRMGNAAGVPDPVGYEDLWWITCNRPPSGSGPNIRYLQLYPGLDIMDTPSIDHELDEDLIDRFKGVFIIPEIGDN*
Ga0070738_1000271519	F031889	AGGAGG	MYGDIPAAGITIRVPNPPKTAQLRLPTNEEMLERLDQQKSIRRTIGRRKSQTEFVPNLKADLDLFNKIRLDKDGAEFDEFEAGNAISKLSFCEVTDCQRAGDEYRIVLRTPFGETVHMLKIPTQRDITVYRRTVVSSTDLPHGQEELRYRIEPAVDLYDSVVTKIEGYATSFKPADVPPHHKSAVIVELVQAIDDLDPALDPNS*
Ga0070738_1000271520	F041367	N/A	VRAAELCDGGSDGPRGCPDANDVTCGKCGLVRTVDDTNAPGACPQCGGWQFTVNRCTHCELDDLDYARSHSNAGRLFERLLELEFDAAHFSIPWSDVTAEEVRGLQILKEERDRYQREQMQKQPHAFPS*
Ga0070738_1000271521	F030458	AGAAG	MPFQARVTRARFVLGPFSAEDMQTIGGVLVDSISTRIRKAFNVNDAPARALKPGRNGRRGYPDYKIARGLMPIRDWVWTGRTMRSLKVKSANENQAVIGFVDPTADRVAHVNNLREKQFGVSPKDRSALNAAVLALLRQARAIRVKRAA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070738_10002715

Overview

Ecosystem & Geography

Associated Families

Sequences