Scaffold Ga0070738_10001072

Overview

Basic Information

• Taxon OID: 3300005531
• Scaffold ID: Ga0070738_10001072
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 63227
• Total Scaffold Genes: 68
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (79.41%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006712	Metagenome / Metatranscriptome	366	Y
F023670	Metagenome / Metatranscriptome	209	Y
F043590	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070738_1000107215	F023670	GGAG	MATDDTKRAAQEFLAVRMSEETVQQEEAVNREAAARLAPQVWKRVADTFNSQCKAWNEILHEEALTCKDTIRGDLRIRCAGKPHQISVHYDSRKLQVTIKNSARPENEKDSVFFIQGWASGAEAHLFRNNQPVNLEAIVLGELRVLAGIGRTAAQ*
Ga0070738_1000107242	F043590	GGAGG	MPRSRNLSKNFLTTALGVAFLLLAVPAVHAQSTDVAGEYVCTEAHVAGKTVQCTAPPLSLKGDGKFELQGREGDYLVNGHWVELKGEVLKSRAKIEAGHKIVFRFTNKKGACEMIYERRVAELGKTNLS*
Ga0070738_1000107267	F006712	GGA	MQHDRPDFPTMEQIEKANHEQLARWYRFQPSGDTKEQQKIMDRIAERFKRLGGMTPALEKKIGL*