Scaffold Ga0070738_10000268

Overview

Basic Information

• Taxon OID: 3300005531
• Scaffold ID: Ga0070738_10000268
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 160415
• Total Scaffold Genes: 171
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 117 (68.42%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000188	Metagenome / Metatranscriptome	1692	Y
F000512	Metagenome / Metatranscriptome	1064	Y
F000775	Metagenome / Metatranscriptome	896	Y
F000885	Metagenome / Metatranscriptome	849	Y
F002518	Metagenome / Metatranscriptome	552	Y
F006229	Metagenome / Metatranscriptome	378	Y
F007488	Metagenome / Metatranscriptome	350	Y
F009917	Metagenome	311	Y
F015120	Metagenome / Metatranscriptome	257	Y
F017859	Metagenome / Metatranscriptome	238	Y
F084509	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070738_1000026811	F017859	AGGAG	MNRGQMERPVEDRSVAELALQELQDRIEASCLESRYAGMVCDLCIGQVSLEQAFQEIHQKAMEQLVGLLDARVLDDEAALDACLEKIAEESERLAWAALERGTEALREGLAMLEKGQAVLDSGFVN*
Ga0070738_10000268122	F009917	GAGG	MGTSGWTYMVVVFSLGAQLVVFLRWIHRRMRDDEIQRVFVRDLALRHLPNIYRALNTIAERQGIEIEETPIVNYVDMGNGGRHR*
Ga0070738_10000268125	F007488	GAG	MEIRAYEEKDLEALKAIHARQGFGYEFPDLGNPLFLTKLVLGREAGGKGIVGASLLRLTAEAYLLLEPEAGTPRERWQWLLGLHEATRREALARGLEDVHAWLPPAIAGKFGKRLTRLGWVRDDAWTPYCKRLV*
Ga0070738_10000268127	F084509	GGAGG	MSSYGNAVPPSSVGFGESAAVIAPTDTIFPAPFKSAQVALAPNFSSGKIRAAVEIVWSAAPGSISVQLQTADTDIDAAYVQEGNAITTVNSGNVTRAEFPDVVAKFARIYIATLTNNVTATGKISS*
Ga0070738_10000268129	F006229	GAGG	MNQQSDVVSLVNICPQKWPPRYRAYFGSLMVNSPEAGESYAVTPIRGCTSVMDLGDKRTMEIRLSAREIADDLAREINGDSGEGSFHGVFVAAGPEPSEAELAEARKKLEEFHARLVEAADLEWERSHNLMFITDLERRAARELRLEKPWLYDRKPMAECPACGERIKPGVAVCRTCRAILDREKAAKFGLGGREAKNDEPEHTPDKKPAKGK*
Ga0070738_10000268135	F000512	AGGCGG	MIQVIRERHETPENVARRLCLAGGVNRYGEANYRVVWGWNRLGWIGGKFEDRDAAGNLLREVVELRWEPKYPQVNRWHVERWVPAEAYGSPRSWYAQTMERADGKSVAALGPYPERGEYEHCFTLQGPRGEFVQLTPTIVEHVARAIEWSRGQGRAKQRAGLYEREERQEKVYEQWAYDVMDDAAPAMHGMPFVTVR*
Ga0070738_10000268141	F015120	GAG	MFAFVKKFFQTRYVGMLEGEVVRLRMENRALLNSLLGTAGVPPVEYAEPAKRVELPRMRRRSWQQIQLKNEIEAREEKKS*
Ga0070738_10000268143	F000885	GGAGG	MSMNSLTNPKVVFIGEVAQIAGVASVVGGVVLSLRHWPAAVALLGGLAAYFVGKKLRGV*
Ga0070738_10000268151	F000188	AGGAGG	MSVKPELAFDVCWEVYRGAREVMEAKRGVAALNLEMEMKYAWRPDLRPKMKDWVADFALAGQAALESPDCASRMVMFRLYYLGLAPYERARHFLGLSERGWVNWSEEIRKKCGAEILRRGMFPPRKYFGGME*
Ga0070738_1000026880	F002518	GGA	MVSGEEKCPVTGKRKYDTEGEALATAAHQIATTQALQALRAYRCTWCEAWHLTKKPYKPGKMPR*
Ga0070738_1000026899	F000775	GGAGG	MKNLDSVFAAYLIGWGVFFLFYLTVARRTSAVRAELERLKNQLPKAK*