Scaffold Ga0070741_10009300

Overview

Basic Information

• Taxon OID: 3300005529
• Scaffold ID: Ga0070741_10009300
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19187
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (78.26%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000391	Metagenome / Metatranscriptome	1196	Y
F023224	Metagenome / Metatranscriptome	211	Y
F043740	Metagenome / Metatranscriptome	155	Y
F052780	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070741_1000930012	F043740	AGGAGG	MDLTLTYEEIELLASILEQRHRELIKEIAHTDHHEFRQALRRNERMLESILVRLREAEVERLHV*
Ga0070741_1000930017	F023224	AGTAG	MALQAPISLSGQDRQKQIFNLLPAKATNLNRHGAAVQLHRELLVGSTVAIKNQRGTIVAARVVAQLAALRGVPTYAIEFLEVDGAAKSFWGISFPSSNAE*
Ga0070741_100093004	F052780	GGAG	MAPTTPSSKPLGLSIVIGIAIGTLAAILSGHVAVWLIAGIVVGIAAGASIGRKKCPECEARDQAGMRAANRERRAMTG*
Ga0070741_100093008	F000391	AGGAG	MSPETQQYESPYAVKIETASGRSATIPIAVLTPKQLEDFLQVEFKRLTQEAGAKGVRIHVERAVAADYEQVIREVGACLRSARSSVA*