Scaffold Ga0070741_10006891

Overview

Basic Information

• Taxon OID: 3300005529
• Scaffold ID: Ga0070741_10006891
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24009
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (83.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000208	Metagenome / Metatranscriptome	1593	Y
F003228	Metagenome / Metatranscriptome	499	Y
F007046	Metagenome / Metatranscriptome	359	Y
F007596	Metagenome	348	Y
F047207	Metagenome / Metatranscriptome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070741_1000689116	F007596	GAGG	MSLRIRFRFDGKCGLHPRYDPARDGRPQHGNCDGCESLYVIYLYIRIAKRRAENCNSIVARLAGRGDEQRASDESSPRSESKTNSF*
Ga0070741_1000689117	F000208	GAGG	MRIRVTTKAALFEERKRQHIERGYRIEDERPTPVNGFCSFVAVQELPASDRLNELVAQALNGNHAARRDW*
Ga0070741_1000689122	F003228	AGGA	MEQTQQNNSEPLDAQQAAAKAVILADCDKLMAAGVRFVAIHFDGYGDEGTTEDVKCYDSEWYASDGHEPVKYDASYLQEHFEDLVPFGYENDCGGFGDVVLNVSARKLTTERNDRFEDYTTSTYEV*
Ga0070741_100068917	F047207	N/A	MSGVVEHVRSQAAINPRLLPAIDQLLVAGIKLGPRKKHAAINKILQLVPEWKRGDCWRRIRQLRRTSALATLDATQDLKKIETNGSLHRPFARPWLQEDDDKLLDLAGYEPVTRIAERLGRSVRAVRFRLGALGMSARVKDGWSQRGLRKLLRVSRARLRDLVASGMLRVRDPRITAASLAAWCAKNRPAADSAATSLIATKTGLAEGPHSWKRAAKMLHVEVVEVQKLISVGKLKLVDTFVTDRSFEEFCRKHGDEINLSLMDLATRKWLMGEYGISETANSRAVPRAQKHALVMRECKCGRKIAGNVYFRHLRHCHMPEQDALDRRVWQ*
Ga0070741_100068919	F007046	GGAG	MCDGETIFVNLHGALISTAIALRCGTRISIHVYLTDKVAGARVVYVDPGSLLRCGIELDCPRNIWGVPLPPDDWRMDVETGRH*