Scaffold Ga0070741_10005830

Overview

Basic Information

• Taxon OID: 3300005529
• Scaffold ID: Ga0070741_10005830
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26921
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F088578	Metagenome / Metatranscriptome	109	N
F095645	Metagenome	105	Y
F097024	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070741_1000583024	F088578	GGTGG	VALQGEPQHGGGLTFLDGELSEVTLDDDEAATFLALVGDLDAVTVSACPGCRSRILAAVALVDLLDAAPPHPRASELVELADEAPTLHVYLVDEGRRCDHEAWLDPGFDEWSDAVEG*
Ga0070741_1000583029	F097024	GGAGG	VATRRLRPPTVVAEGVEQRLMDVMHDADGDLDADLDDAEHGRWERHVESLRRRRRLRRRLAAVLAVAGIVAIIVGLSWHPGRHSSGTGPTPAANQSGSVNGPVTPNTAKPPTTGPGGVGADPVKTGLPAVPDGGRVRTGTKAEGCFDTMREYLDAWDKTGVEPDPCFTAQVPADQPQPPGVARSYNGEKF*
Ga0070741_100058303	F095645	AGGAGG	VTLTLEGAPTAPPEIQAAARRFEAVWPQWYVRYSVERAPFRLTNLPARLRHSPAYLTAETFIDVRSVRPDGTVRLDPEAYEALCWWDLLHPVVLFISDERSGRWCLEPISVVTEWISTGRVEPVAGPGGATWWAIPADVIFDAEVQLD*