Scaffold Ga0070741_10002417

Overview

Basic Information

• Taxon OID: 3300005529
• Scaffold ID: Ga0070741_10002417
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 50389
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 57 (85.07%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000208	Metagenome / Metatranscriptome	1593	Y
F001830	Metagenome / Metatranscriptome	629	Y
F072557	Metagenome	121	Y
F103983	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070741_100024173	F072557	AGGAGG	MLRGALQKRFDLGFRNTLANRLLEPPNPFEPTSVARPQRWFVLSCVVLLAAVGAILYFNFWN*
Ga0070741_1000241737	F000208	GAGG	MRIRVTTRADLLEERKREHIERGYRIEDERPIPVNGLCSFIAVREIPGSDAFSELVAQALNGRPGSRGDC*
Ga0070741_1000241749	F001830	GGA	MNREQIAQLRAKAALFYQDARQWAARVPVKARAVLVLFLVAALLMAVHTALTAKDASLHLKLQHGFHNAQVSVWVDGDLAYSGKVTGSTKKRFGLIPTDSVQGSLSQIIPVRSGPHKVRVRIEPDDATMQEDSISGDFAHSSERDLSVSARQSGLSLAWLGTSSAPAETSSTFGWFSRYAGSLLLTIGGSIMSALTGYAIRELPARFRSTADSTPKAELGPQ*
Ga0070741_1000241764	F103983	GGA	MPVLTAAVFNDQTKRPIAWMCSVCETAFALDRADEILTKRSADKINKDFEMHCKGKHPGSQIIGLDIPHEDFSQEQRR*