Scaffold Ga0070741_10002389

Overview

Basic Information

• Taxon OID: 3300005529
• Scaffold ID: Ga0070741_10002389
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 50853
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (61.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009780	Metagenome	313	Y
F024762	Metagenome	204	N
F028024	Metagenome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070741_1000238921	F009780	N/A	MEHRLHQLFLLNLCLQIFDGVATYQGLQHRWSEGNPLIVSWIPYLGVGGTLLLFKAKACGFLVILRRLGKQPLVYEALIVLATVYTCFSFIPWMSRLVSLLYT*
Ga0070741_1000238930	F024762	AGG	VVRPLVAIALAVAIGCGVRAPELDPKERVRGEHQRVVQMPLDRLWPAVLKALPDEGLRVAQADHKRGTIATRPLRYTGRDLQKKIGEIGDLSRARSEGLGRVTEIEIAYFLLLSPAGDSGTNVRIRTSIDAIDRSDAVFLGPGIFQIVPKHIAVPSRGVAERELMRRLASALFTTEEMLFLLGEPGVD*
Ga0070741_1000238935	F028024	GGAG	MAVVRFLFALLLGFMLGTGTVLYLIHSGAGDFLIRRTDSMQDMERRLREVEQQRDQLGRQLDDVIGRAGRMETAFGELEKRFHELERDRDAAHPAE*