Scaffold Ga0070741_10002195

Overview

Basic Information

• Taxon OID: 3300005529
• Scaffold ID: Ga0070741_10002195
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 53966
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (81.03%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000628	Metagenome / Metatranscriptome	973	Y
F001966	Metagenome / Metatranscriptome	610	Y
F015939	Metagenome / Metatranscriptome	251	Y
F026686	Metagenome / Metatranscriptome	197	Y
F061171	Metagenome / Metatranscriptome	132	N
F077875	Metagenome / Metatranscriptome	117	Y
F078445	Metagenome / Metatranscriptome	116	Y
F091747	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070741_1000219521	F078445	GGAGG	MSVRTLALDQYNRDRRRLNTRLGLLMILLIPLPAILLRVRFEPLEMLALVVAIAVAVGIIYPLWWRSKHHPYREDRREQRTRRLAVACRTVAFVSLVGFMVSWVVGSDVSSWIALTFLAAGAAAFIVGFEVEERWKRVVLRRAAKIEADQ*
Ga0070741_1000219523	F015939	AGGAG	MEVLGGLTGLQEGPDGRLPDGTHYEYDPNLRATVEVTPSGERFPVVLVDGKLQRECEALVARKGEAA*
Ga0070741_1000219524	F001966	N/A	MDPKDKPDPYGDWVLLGTKQGPDGPTLAIDQELLTAARAAWPRVLAHARGEMFDKELGPERTAVAADIWDRVLQSVAKTRQRNKDHRPPISDLESYLIGVFHHRFNRLLKQEQRRAETIELVSSIQDLERFEAALDTEWAEQLERSIAVRQITDRMDSWTKKVWEARQYEYSWKEIASWLGITEQQAKMKFRYNLEKIRQSIVRILKRRTPKEPG*
Ga0070741_1000219531	F091747	N/A	VVPPIPHQRDAMLRERRSFAVEDLTVDTELLESARQAGYATKVLFISTEDPNLNVGRILVRMSRGGQAVPLGTIPESYEEAMKSLAEARRHADDLLVYDNTPNGKGHRLVARFIAGELVKTTHSTPEWLKDVFGRELQSEAKAKEKSPRGR*
Ga0070741_1000219532	F000628	AGG	MYISYRLDRSKNLLRTPQSSLVRPVAIRRKAGFDVFNVRLLIGLDKLLRKKRRYQGDLSASINDALLAVNLNTVKLVTLQGKKPKTARETQVVILRRLIRRIQRIAEARGCSMNQLVNSGLLAYYSRGRRGKLDGSSKAVRGKSMAAYDKMSTEERQQLMQVLASLSGLQEGPEEEFPDGTHYEYDAALKTTVEVSPSGERFPVALVAGKLQRRSDKALAHKTTR*
Ga0070741_1000219542	F061171	GAG	MTRYDAAAAVVLKATAVVTIVCAASLVACEVLVPWHPLFAGLTLSAGHLGMIWVGAALGGSGFLACCVLEGRSYMRSWVLYVYAFAFLAFSFVLLMEWFEVSGASGLRS*
Ga0070741_1000219545	F077875	GGAGG	MRFLLGFLFGASYSGNRAFRVAFLLIILFLAFCLYQMSKPLGHGGRVTPPPAQVR*
Ga0070741_1000219546	F026686	AGG	MGSVDTKRLSGEVAARHGLLIREDDPAMALVTMSEIVLEQVLCEAELRLRSLFAEAEEGQKRSQQETLVWVQEEMGRAGSALRAQLQRDIDAGRLQARELVTQLSQVYSRSAVRRWVAVGIVSGLLLVLIGIGLGFELGRWLR*