Scaffold Ga0070741_10000680

Overview

Basic Information

• Taxon OID: 3300005529
• Scaffold ID: Ga0070741_10000680
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 116908
• Total Scaffold Genes: 139
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 96 (69.06%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000309	Metagenome / Metatranscriptome	1327	Y
F000793	Metagenome / Metatranscriptome	889	Y
F000828	Metagenome / Metatranscriptome	872	Y
F009829	Metagenome / Metatranscriptome	312	Y
F010187	Metagenome / Metatranscriptome	307	Y
F027929	Metagenome / Metatranscriptome	193	Y
F055151	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070741_1000068026	F009829	AGGAGG	MYARIVEFVPRHEMKDQLIKTMKNEVVPILKKQIGFLDVLPLFPEMKNEKAVHITLWMEKKDAERYEREVFPRIEDILRPFLTTPITWRLYVVETTLCEHFVNALAA*
Ga0070741_1000068055	F010187	AGGAG	MRCTPEDVMKPDLFSEIVLLGCAAFALVSLLLIIATALTGA*
Ga0070741_1000068057	F000309	GGAGG	MTVNENQSIERTLESAVVVSWTDLICGPQPGLIHIEYGFAATGNLDYLKLWSSVTRGHWRLVCEYWMSPSTFHPAGVHFENGYQSEGLAHILEFVMQHQNLFVLPMDHGRQGLLQIPTPTEAQTTAAAAWMNEAFNRLGSPVGKPVLA*
Ga0070741_1000068063	F000828	N/A	MEETKKSIFDQQYRVVAVDGNRLLVRGILSGEVLTIINSEPEACFAQENYPPGKLIALTDPTTAMLN*
Ga0070741_1000068067	F055151	GGAG	MKTFLLAFPFLCFAAGGIAFAQNPSKPVPQQHPAAKIQLTSMMGTVREDGERLTFVTDQRAWNVDNQEILKGHEGHYVRVNGHVYPDKGSIQITQVTMPTASESRKNDLR*
Ga0070741_1000068072	F027929	GGAG	MKMSKVFSDFKKITTRCELRRTLEFIIGRVTYRVEVMYCYSNPKTPWVAQAYSEQRSGWKCIPDFPCTGEKNEEAVIRAALSFLQELQ*
Ga0070741_1000068096	F000793	AGGAGG	MHLQWFSQHSIPLNLILEYIPLVATVATTILSLVLARATLRYAEASDKSLALAREEFERQWNPELHIKLEKASGRQARIVVTNLARISVLLQMVQLRRLSMAVPSLRSFLNEPLVGGTTWTEDLAKHLFACTGDDYEGQIAASVTFYASGRLYRTDWFRFQVQVNRGEILRLDPVNIAARRVRVLDSSGKTRQELAKDVVGAAAE*