Scaffold Ga0070741_10000092

Overview

Basic Information

• Taxon OID: 3300005529
• Scaffold ID: Ga0070741_10000092
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 336348
• Total Scaffold Genes: 333
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 247 (74.17%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001115	Metagenome / Metatranscriptome	774	Y
F007326	Metagenome	353	Y
F019455	Metagenome	229	Y
F021329	Metagenome / Metatranscriptome	219	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070741_1000009225	F021329	GGAGG	MAEAASKFKGKQVEVEILTDTYKIHGTLFVPLAGKDGYSARLSDFLNNPEKTFLALTHVLVEALPDPEMKWEAPFLAVNKSVVTIVRALKE*
Ga0070741_1000009227	F019455	GAG	MVSNAVGMDEDRVVAALQRLKAQHSEDPDYKKLRKDLPKDWPI*
Ga0070741_10000092271	F001115	GGAG	MKSDLQNLTEDISRLYEDITQKAESLGQIDSITRLYDELQTQLQGISTEEVDLLQSQIKSTLEQMVGISKSLAVIKTLKMTLNGHDELADLAKKAGAGKDSRRALEDR*
Ga0070741_10000092324	F007326	AGGAGG	MEQVNLGAVIEQAITRFSQNRVGEKPPVFVTLAPVLPQIPWKGAALRQFLQFFLYESLLTSDASAAVEISLRRRSVLKDLTAFVGIQPSYWVQLRVSGRGLRIAEAFVEDLFAEVGYRCEEWVGMDGSAARLGIFGTIDAPSLKIVFCIESARHRLRCDLLLPVVDKSPMPSLGDFDAERA*