Scaffold Ga0070741_10000081

Overview

Basic Information

• Taxon OID: 3300005529
• Scaffold ID: Ga0070741_10000081
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 348416
• Total Scaffold Genes: 345
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 247 (71.59%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008208	Metagenome / Metatranscriptome	337	N
F023186	Metagenome / Metatranscriptome	211	Y
F024167	Metagenome	207	Y
F041134	Metagenome	160	Y
F057279	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070741_10000081178	F024167	AGAAGG	MSLIELTVMYGHLEGAGKDFARDPTGYLSIDAGIFRRHGLEVSWQHVQGTEERYRRLEDGRAQLSLLVGRASLPHFLKTQSTRILGAAMNSCPYYLVAASNINRIADLSGKIVACREGPSRGAPISETFFDLAKLRVGTDLELRLPGGDQDAFNLLADGKVQAALLPRPFGFIAEERGFKRLSEWPEVVDDPLPITIETTTKLLAQRQKDFAAFLTAHGDGIRHFKTHRTEALAVLTRRFGQSAAMAQKTFDEYIVCMDETLKVDCPRFEKLLSQVAPEKAGAARQVAAEWIVGGGLKV*
Ga0070741_10000081253	F023186	GGAGG	MRPDSRDESKVISLERTDFKAVRCDKCGAKMYPQSLLASHLVRHQSRQRWLDSEIKKLRHTFTHMRDIA*
Ga0070741_10000081256	F057279	GAG	MPSYEVYVHCFDCGGEHPLLMKIYLEHGPDRKQSVAESFRAGPVPPQVLAIKGRSALCLKTGKKFRLENDEQVLLVPASLFQP*
Ga0070741_10000081294	F008208	GGAGG	MSSGIFRFFGASVATMLLVGFVLAPTPAPAQGLQCASNPLIGTWRLNLQKSTITRNNGVIEPRIMIIAPFGENGITEVFINDRDPRLAGRWEMWSVQFDGKPYPTKGGDPRQMRWTRIDCNTFQHETLRQLYYNLPEGTVKEYIPEGRVSSGGRITVSADGKTLTNKHTGTLGSGSQTRYEDEILVFDRL*
Ga0070741_10000081343	F041134	N/A	VALQLRAKGITRVRPLEGGIDAWLSDNFPVVTEAPVDKSVVL*