NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070741_10000076

Scaffold Ga0070741_10000076


Overview

Basic Information
Taxon OID3300005529 Open in IMG/M
Scaffold IDGa0070741_10000076 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)354380
Total Scaffold Genes340 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)228 (67.06%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000092Metagenome / Metatranscriptome2385Y
F005333Metagenome / Metatranscriptome404Y
F005708Metagenome / Metatranscriptome392Y
F005722Metagenome / Metatranscriptome392Y
F024849Metagenome / Metatranscriptome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0070741_10000076100F005722GAGGVKSFLSSRDLLAQIERALAEHRPSYRHSPLEKVAELLADGRHYGWVGIYLKLDEKSAPALLENLVHPDQFAVAGTRKKVIVTMKIAGREVGFLNVESDRESAFGSEERVLLERVAGVLAKFLVGPGKYLVRKASEPQLPQKAAAA*
Ga0070741_1000007619F005333AGGGGGMSKLKVLYGELNEEVLASQASELQKSGYQVQTAVGRKGVQEALNKDSFELVILGATLTRDDRHHLPYIVKKGQKAKVLVLHTDGSRHPYVDGNIDTGEDMQHILAKISALHQQPGQAKTMAARAGSK*
Ga0070741_10000076190F000092GAGVQKSLGRQAGVQTVEVSLRDGTVEITPKEDGKIDPPHLLKATYDSGVSVAELDMIVRGKIVKDASGNLALQVEPNQIFAFSPNNMSKSLEPLVGSSTQVTVRGQLYKKPAGKKKAKWDASAPLNLLILDIQKKE*
Ga0070741_1000007672F024849GGAGGMESTAQDWRALSEAASREQDPEKLMELVDQLNRALLQRELQVRRRLSAN*
Ga0070741_1000007689F005708GGAGGMAASQVVLYFDRQEDAVQFTLAASSVIADGTPLRETALKVAKEVCKATRITTEGSLSGEATKPKSRKSQ*
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