Scaffold Ga0070741_10000071

Overview

Basic Information

• Taxon OID: 3300005529
• Scaffold ID: Ga0070741_10000071
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 365929
• Total Scaffold Genes: 346
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 234 (67.63%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000036	Metagenome / Metatranscriptome	4352	Y
F000793	Metagenome / Metatranscriptome	889	Y
F001632	Metagenome / Metatranscriptome	660	Y
F004421	Metagenome / Metatranscriptome	439	Y
F009085	Metagenome / Metatranscriptome	323	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070741_10000071130	F001632	AGGAG	MFENLWKLAMVFPVSASILAFAGETADSQKYCSYLMEQAFAQRDLLRTPVGFIGTTQPETGLPMQVIGGASLGLSNVKKASLTMEVARKNCELYKSTLGAQKNVQYAPVLLEKNALQHRLALIDEASAALDSLTNKTRQMVQAQTATRVMLFNLQTTKIKLDADRADTQSKISVLYTPSLSETPLKNLISEKQNREEDEQKVLDRFNRQNNWDVALSVGIHQQVNPVAQGAQPYGAVSINYNFASRAIDRHLDNAAEDYAGWKKVQDGDVVRSVEILQQQLQSSISVQQAKLKSLQQENDEISRNLQLIGNPDTSATLDFQNQLIVAQLLIHIEIGDASFRIQSWQEYLASNY*
Ga0070741_10000071283	F009085	GGAG	MNHLLLSLAVQFSLAFGVAGLLWPERLVAVFDVLMFPWPATYKLVRANAWAALLLSVLLFAALLARMQP*
Ga0070741_10000071292	F000793	GAGG	MNLQWFSQWLGQHSTAFTVIVAYIPLVATVTTTILSIVLARATLRYAEATDKSLALARDEFERQWSPELHVKLEKVGPRQARVVVTNLAKISVLLQMMQLRRLSMGVPSMRSFLNEPLVGGCTWVEDLGKRLFDCVGDEYDGQLGASMTFYVSGRLYRTDWFRFQLQIRRGEIERLEPVNIAARKVRVVDSAEKVRQELVKDVVESASGAAAGR*
Ga0070741_10000071305	F004421	GGAGG	MSGKQLMRMEEIQLGGNETKGAVLMTVGKLLLWTDLIFLSFLYAGVKGGSYLYTYWTVLQGLTGLILLIVGRVKRGAVTE*
Ga0070741_1000007183	F000036	GAG	MACDSTEQLRAEYGPFHTRVEAEREAAKLGFGYLLRYEHIIGDDDDIKEVRCIFIELQLEAVQQAPEKLHTRCATCGASAVHDYSWQAEVWADIHEFEHSRHLIRLFEQTRADGLKEVRGWRSACAEGSFE*