Scaffold Ga0070741_10000053

Overview

Basic Information

• Taxon OID: 3300005529
• Scaffold ID: Ga0070741_10000053
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 404457
• Total Scaffold Genes: 371
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 278 (74.93%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000249	Metagenome / Metatranscriptome	1459	Y
F008435	Metagenome / Metatranscriptome	333	Y
F088029	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070741_10000053118	F000249	GGAGG	MKQFKLAVAVCLIASAAVAQSDSVTDTTDRFFLPRDTFWGYAQFDLAPPHNEIDPNLCAGNAGTYGGVNAPCSEFARYMLSGLLEVRPFGQGQLRRFMLFGEPSFLFGRNIPQTQYTWSFDAIGIEHSWGLGVYLAKGFEFRVTQHFLFDRLGSRDKNLGPADLGNNGPWGRYNAIGVRKYFGKRRW*
Ga0070741_10000053130	F088029	GGAG	MPQEISVSYQAVKSKVYKLIDAAVEGEKTDQQIRESMQRWWKLVHPTDRAVAQKYLLRVLERSHASLNAMTHAFLESAEHEPPHEALPEKIAKAQPNNGHSRSAAAM*
Ga0070741_1000005332	F008435	GAGG	MFNNPAEQFFEEMLPYLEKLDAQIGAVIQLLKDKEITTDEEFSRYVQKADLASNVRDRGLRVRMEHLFAIASDRDRCR*