Scaffold Ga0070741_10000031

Overview

Basic Information

• Taxon OID: 3300005529
• Scaffold ID: Ga0070741_10000031
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 513048
• Total Scaffold Genes: 472
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 291 (61.65%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001368	Metagenome	713	Y
F009167	Metagenome	322	Y
F016435	Metagenome	247	Y
F029793	Metagenome / Metatranscriptome	187	Y
F030578	Metagenome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070741_10000031104	F009167	AGGAGG	MKRLTLVLAITFALAAVATPLFIKSGAQTRNQSSKVVFIEFFVFPNECTNELMDVYDTTTVTCHDQQRANGTFLEKCEIRQDVSATGEDTGINWHGTATFKDDLIASDQCNFSFTNHGKVPLISNGPAVNTFISFDDTVVVQNCNMTVNEHVTSFDCRGNGK*
Ga0070741_10000031167	F001368	GAGG	MNRDAATTERLRSLVSKIESLTESGDLHWERQAGSAHRYARWNNNLLILGPATPLSDTSVPRYLFITPFDSPDCIEINSDDSDLGADVMKLVQQVEQTSQSEPATDPFAITEQMLERLEGM*
Ga0070741_10000031207	F029793	AGGAG	MRLTRIVVFSIVCLVAITGVVVSNFAAPAASVAGVYENFTVGQGSGDLEGMRIVIVPAGGGYYAIVQIAQGGAEDPKPEFVEATVKGRTASFTVGDAKYTATATAAGLTVKDSDGQTHVLKRKPCASYFK*
Ga0070741_10000031311	F030578	AGGAG	MRVHARLPLPVLVAVMLSAVITVSAQVNSESSQSASSTDSMVNEIGLLRKTLQTLNSRLQAITSELLSPASKQNDNEKVKQIATNLDLLAHTEERAEVLRKQLIELIEKETAYRTRLTQMDEDMRPENIDRSMAGIGGTRTAEMRDTRRRSLDSERRGLESLLTLASQSRIRLEEDVRQADLLVAKFRQRLFPLIDKQLDKLNPY*
Ga0070741_10000031414	F016435	GAGG	MSTRQITLPFRAKRVEFENDPNADLIGRTYEDGEATITVIETCLNDQRRVMVERDIDGHTWSMPAWLMRLVFKETKRKRAA*