Scaffold Ga0070741_10000026

Overview

Basic Information

• Taxon OID: 3300005529
• Scaffold ID: Ga0070741_10000026
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 541930
• Total Scaffold Genes: 553
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 380 (68.72%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Associated Families: 15

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012957	Metagenome	275	Y
F013593	Metagenome / Metatranscriptome	270	Y
F013621	Metagenome	269	N
F017022	Metagenome	243	Y
F022510	Metagenome / Metatranscriptome	214	Y
F030603	Metagenome	185	Y
F032948	Metagenome / Metatranscriptome	178	N
F034876	Metagenome / Metatranscriptome	173	Y
F041659	Metagenome	159	Y
F043144	Metagenome / Metatranscriptome	157	Y
F044805	Metagenome	154	Y
F069903	Metagenome	123	Y
F082296	Metagenome	113	Y
F082441	Metagenome	113	Y
F085792	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070741_10000026164	F044805	N/A	MWFVFAFVVMIIPKQALADQDPKAHGHNAVRGGVIREVGETHAELLIDKFGRPKVYLYDKEMKPLERDIQARLTVKTHEGAQYERDLKFTKDPKEGPVFRGETINGLRDWDTAVVSLKLKDSWTHLKFSHH*
Ga0070741_10000026165	F082441	GGAGG	MKKMEITIMALLVGASAYGAYAAEVTLGPDLKIPPYYKASSGSCSPGRGYNFSAEAPNHPSTYPKMNLRVFNGEVIGFLFELDAKEGWKPWYDQPEGKATQHDNSPPHYTQTIYIKKGPTAEECKASKGPYGKEIR*
Ga0070741_10000026193	F030603	GAG	MKKNWCCKNIHADPHVAMSLALSQYHVSTPEIRLLMRNVLGHALSGRTIKRLIKSSGRRLKRGRPRTTPKINNKYLDDLIKLTSEGLEPFGGNALHFLNHVELEYGLTPRQYLKWAAQFVCRGKYMMRACLLCGDLFPSAASGDRHCRQCRTGRQRLLRENNQSIFTNIGENGGG*
Ga0070741_10000026194	F041659	N/A	MASGNSYLDEMGMVDLARKTVEDLRKRGISQMELKRLENLLREGKIGEALLLSTLLRTILDETTPEASQKKLLQLYRALEECCGALVELSCGLFDMEVWQHYRAAGYENFEAYCAQALGIPAGKIQALKSIKDQRLPRSRVAGTPEFFSWLFCVADRLAGAKGPADL*
Ga0070741_10000026195	F013593	AGGGGG	MTDIAYSFETLMGKHGGLLEVVEAVISDGRLIVILTDEDVLQRRDAPLKGIFYRLVLPLAQATASVKGEAFALVQESLKFSEDGKGLEKLAREVIG*
Ga0070741_10000026204	F082296	AGGAGG	MRSFNELISVWFVAVILSGCAAAVATDGEVASTDNPETSFASCPYLRTQQASCDELKKAYDEGFRAGKEIIAAEFRTRSELNQPYVWKPPLISEVDMPARVVNGVMIPAHRELVIVKPGYWVRTENIVQTK*
Ga0070741_10000026232	F043144	AGGAGG	MKIISTIKGVPGKIGLAWSSFVLKHPRGYLMTTALIGVVSLILLFVPEASAQLETQVTDALNPLARLLVGPVAKGLAIIGLFAFVGLLYAGRWMMAVSSLVAAVILGLLANIVTAIFQGSNAASFTLGG*
Ga0070741_10000026242	F022510	N/A	MPLPPSILKQLWEAGYAGKVIRVPAKNERLQLKVIANEILKDAERLYESKGITFVLERRGRSDFYRSFGALKLCRRFHLSIEEARKVRRRAYSRWSHWVRESEAKILQTTERFGESREGRQKYLEVRRRVREGEDLTGVTGNVLELAHASIRSVKWN*
Ga0070741_10000026245	F069903	AGG	MPRKRITLSLNTDDPGDKAIFDFLAGLPKRTRSEIIKEVLLDTLEKRDEKPQPDSPPTTNTSDPAGTDPEEIIEKLF*
Ga0070741_10000026246	F085792	GAG	LETIDGERKTGGRLGLVIVIMACAHLVLYFAPYLYLPFDLDELFLLGYALVLADSSLVVFLGIRLWTLVCTKR*
Ga0070741_10000026281	F034876	N/A	MSNSGGALPLKTLRLKPLREEEMMSQVGSSTGGVQKLQRRGTLPPLSRRKTKRGLREEGIMRRKRKEKPVLQVLLIAALALNTTLSFVVLANRNRMSQPRERTEPVPAPAVITLEGAMVEGRSQTAANPASRPNAGERFNGTRAPEATARKTAPAKVESSSRGKDEIIFLPSAVLYRLTRDTILVTRRDGARILIPKGTVVRVAGITRDDKALVVSRKGNPDGLIATASLEAIPDEQVRPGSSAPIRRATVNAPSRASDIPGSFRLSGGTYGGSIGLGGAQIFVGQNGQLSGSLIR*
Ga0070741_10000026284	F017022	N/A	MTLQHQDCEECRLNVEIIDVNGDLISKQILRGMEKSGEQVAVYVKRKGQLLSLITMKTGDAPEALSLDQESAEKYYKYLKHLKTGEAIVIVTTDESNHVGIYKLPPVSLQ*
Ga0070741_10000026286	F032948	AGGAG	MAQLQQQSPGRYVMKDLYLFSCKREVLARKLETLPITIPLKPIRPETALRRALSLNLDQKRYTFEESSFEKVNDKPVQIILSREALSSGDIDATVGKAYVERGRIEVNTTYPEIRNSLENGFRFHMETAITRDLSIIVTKYLIACMGIPVRPKNGEIYFALEKYIPEVHELMTVIDSLDQESTIRVSPVVGDEVQKVVERAHDHFRTSVENLMRLTEEISDETHTKTLNTRLKDARDLLEQAAAYEIGLGMELEEIKAKIQEAKSRISERLLGKPAVTNHSQEPASTTAYLAASGGQLDLIK*
Ga0070741_10000026297	F013621	AGGAG	MITQEEAKEFIRRYREVVFDTPAGEVHVCGSKDVYEELIGQGKVAFSPNELIHLQKAAENGSLETIVKIKCSIPGAKIKEIIPIEKKQEATPKQN*
Ga0070741_10000026298	F012957	GGAG	MEKAFLQTLNLYRAKSALQISPSPELALVFVSLAPAIPGLENKIPDKNSKKYQWEKKLTASFNFEGALEVAAAAAALAQGREELVSGSDGNLPSWYRDPTKTGRDGSAKTIGFYRPKDQPKTPKVRYFLGITENSKDKKGNKIGISLEYPDLFKIARVMEEAALAILGWRKEIEGRTETNGQDRSAKSKPATAEAF*