Scaffold Ga0070741_10000006

Overview

Basic Information

• Taxon OID: 3300005529
• Scaffold ID: Ga0070741_10000006
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 728509
• Total Scaffold Genes: 718
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 545 (75.91%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004160	Metagenome / Metatranscriptome	450	Y
F006450	Metagenome	373	Y
F012235	Metagenome / Metatranscriptome	282	N
F018358	Metagenome / Metatranscriptome	235	Y
F032741	Metagenome	179	Y
F040236	Metagenome	162	Y
F044115	Metagenome / Metatranscriptome	155	Y
F046463	Metagenome / Metatranscriptome	151	Y
F049922	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070741_10000006121	F040236	GGA	MKPFVRYTAFVLAVVFLSGAAFVWFDVLTHDNIFTNPELKTAAGWLTTGLMLLGLALRGRRRGAQPKSPGE*
Ga0070741_10000006258	F032741	N/A	MFPRIGSLFKFNLLLQVFDGLFTYHVLTQQGVPEANPLVRSTIYEWGALWGIVYWKLFACVLLGLIFALRHRKYGLSFKALTVTSAVYGSFFLVALFFFVSHLPL*
Ga0070741_10000006297	F049922	N/A	MTGDNMLFHYLSRLTGQKEGESDIKATDSDAEKPSYWQLVFLQSKVNGAAYNGEELPGRNWKWPEDTYLQRRLQKHRFLQPSEDSKLN*
Ga0070741_10000006314	F012235	GGAG	MQGSRRAAAQPDRRSGPSANSIIVQLTDTFKVKSNDGGGYFARALRAIGQDLHELIPQQLEIVYKDDVFEAQARCDRKRAEKKAPPEAKSGLKSVFHKLATYRLDKGPEGPDLATYEHSYGRDEISRLDRAGLHRRAQAGKVPDINQLGEALRTIGRIIDGAGGQLVRLLRDQRRVTFDYVTKTGETVKTEMTRTELFKVQQSYYEKRSDSKNIDLWKGHD*
Ga0070741_10000006387	F044115	GAG	MTRAERETADAKAVRERLAELLRGQNKKARFMTEVYAALERFKIGAAETDRALAELEAEGALMIRDNFCADPHLAGADLRVVALVESRDGGDAQMSAIRVIDEAWNKWLSEYLANHRCG*
Ga0070741_10000006525	F046463	N/A	MSATGPVKTYKVREAYRQQTYVGVISLNPWTHAWAWKGHVDFDAGLHAMFTKRTFATAAQAEEHMRQSAHQCIDNRLG*
Ga0070741_10000006661	F006450	GAGG	MPIKKPPFSVARLDHGVLPSNDLGRAFRFWSGFLGARLEFLANLNGRGLNREVPMIVFFTVANHPGFGIALQDFRLTKPARPLEGVVFGFEVAADDLSAARQAADKQKLECSSLEYPASSPLRASLFVLDPDGNTVELCARRNPSALAPQGGAVPLRRISHARVEVTDLDLARSWYGETFGLIEDAQVPGENQLTLTLPESGQLVILRKVGQVAERSTRCFKGPHIDFRASAENYREIFKRFDRRETYWGPDPNQIPWHEPDTDTAYGYDPFGNRIQIGILAQRPMTFGNVSRAAPAA*
Ga0070741_10000006690	F018358	N/A	MIPVAKEVGSLRAIPSGGIVSPTGNPELAPEKEKQFRRELILRALKTLQEEV*
Ga0070741_1000000684	F004160	AGGAG	MEITDQIARRLALLEGIDLPPADVEAIAAEVADLDRVVAELEEFARRTPWMSQQTQPAGKKD*