Scaffold Ga0070741_10000002

Overview

Basic Information

• Taxon OID: 3300005529
• Scaffold ID: Ga0070741_10000002
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1190824
• Total Scaffold Genes: 1062
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 754 (71.00%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000072	Metagenome / Metatranscriptome	2651	Y
F000793	Metagenome / Metatranscriptome	889	Y
F003242	Metagenome / Metatranscriptome	498	Y
F003894	Metagenome / Metatranscriptome	463	Y
F004194	Metagenome / Metatranscriptome	449	Y
F004531	Metagenome / Metatranscriptome	434	Y
F005716	Metagenome / Metatranscriptome	392	Y
F006572	Metagenome / Metatranscriptome	370	Y
F012297	Metagenome / Metatranscriptome	282	Y
F030722	Metagenome	184	Y
F045172	Metagenome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070741_1000000211	F006572	GGA	MTHFPQCNPAHRPTRIKLQTTPALIRLNDGHRAKGKLQVVSTTGGLLQLANAIAEGDFVEVAFQAQSGMVNGMAEMLNPVHKSPGSVFQPFRFIALADDDQDHLRRLVQDCGDQSFRGLRSSKWNHET*
Ga0070741_10000002130	F000072	GGA	MDVERTISDIERLERLFATPDTRPLTATDISAANRRHDEKQANSPWFRLWQAYGLCCRTDAPILQLPEGRR*
Ga0070741_10000002192	F030722	N/A	MKLLGFLLLLSGWAIVIAALILLHGGAVSAFLIAGVAVEVVGLVLVARAHLPA*
Ga0070741_10000002244	F004531	AGGAG	MGQEISVSYQAVKSKVYRLIDSLVEDAKNQDDVQESVKRWWKHIHPADRPIARKHLLSVLSKSSASLEAISGGLLDLQDFEIHQVHTDAPRIHTMPHPHVERMKASV*
Ga0070741_1000000225	F012297	GGAGG	MNSMHYLYAAYAATWVIHGVYLAILTRKYAKLRREMEGLKKS*
Ga0070741_10000002467	F003242	GGA	MWLEKLTSGVLRVLTPLGPRYLNPSFAQRLYLIWIFRHFQTLPVKVLNSRQRHMIESMCANNQFVPLSVGFDEAPVLGTLEQRPPVPPPSLPRRPTSSVRDSVSPLAADVQR*
Ga0070741_10000002564	F045172	N/A	MLWRQKLKTLSFALLTMSIVSAMLVAGADAQSLTSAPHPSAEIVALTEALEGRWVINVKFEPNSSATSGLAYTGEETWRPGPGGFTLLEEEHMPTPEGDLYLLGILWWNTATKSFHGMECQNLLPYTCDVKGAQNDITMAWNGKEFVIDEIETSKSGKKSVWHEVWSDITPDSFTQTGEYGDPGGPRKRLFTIHATKVGNSQIKNDQSQSNISEPAPEMQSLAKALKGNWSTTYEFAPGGISRSGGTGTGEENWKAGPGGYVLIEEEHVHTPSEEMFLIAFHWWDSTTNSLRGMLCNNSGPAACDFNTYSNSSLNWDGKKLTIDLEFPQAAKKMTWHEVWSSITSRSFTQTGDMGELGGPLKRAVTIHGLKEQ*
Ga0070741_1000000270	F005716	N/A	VGHPQILNKGVNQLQFKVKEQDYFLAFVEQERRWYVFAPTAQGVHRIPVYVDAEKYGSLATLGNETTLSS*
Ga0070741_10000002809	F003894	AGGAG	MQHTNIVLLQSDPKIAQTLAALLSNSFHRVHVAGSVDELRHAAAKHHPSAIVLDLESAPITEVEALTREFEGVRVICNHRVPDEEMWTRTLSLGAEDCCPSSDTRAILSAATRAEQLSRHMAA*
Ga0070741_10000002891	F000793	GGAGG	MHIPLIFRSTSFTLVVEYIPLIATVTTTILSIVLARATLRYTEATDKSLALAREEFERQWSPELHVKLEKIGTRQAKIVVTNLAKTSVLLQLMQMRRLSMGVPSLRSFMNEPLVGGCIWTEELGKRFFACTGDDYEGQIATAVTFYASGRLFRTDWFRFQVQVSGGEIRRLDPVNIAARKVRVVEGAKESRRELVRDVVGVTSAVTAD*
Ga0070741_10000002933	F004194	GAG	MKSPASLVARILGAALIVLAGIPAADGELHWHSVHKHEIEVRLIALAEAYPRSSVFANDEVFVAEQELSKEESRFIKLIYDFLPYQPSLSDSGLDYSYVHKVIAVRDTSCDENLWQMRSLMQQRSQAKQPNSSWKYAEESPISDLDRRQARLRCYRTSSDDYEQALHEPTAETPY*