Scaffold Ga0068872_10339152

Overview

Basic Information

• Taxon OID: 3300005528
• Scaffold ID: Ga0068872_10339152
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 827
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004723	Metagenome / Metatranscriptome	426	Y
F018713	Metagenome	233	N
F024743	Metagenome / Metatranscriptome	204	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068872_103391521	F018713	N/A	MNPDPNLWREIPQEVKDAALLLGNYFKKQGIDDWDLYDVSSRQNFNGAYNQGLDTAISLVSEGSDMETIICGL
Ga0068872_103391522	F024743	AGGA	MNDVALSNLYSHASGAYNEAKDAQDLIIMMNVLHLRLEHNMAYHKIAKRCGIKVNKVKLILFNYESRS*
Ga0068872_103391523	F004723	GGA	MEKFDKFIHTDIVGRKHEVTYTGTRRIVKDCEFEFFVDDKGDSCFFTDTEVKKMERIEE*