Scaffold Ga0068872_10146543

Overview

Basic Information

• Taxon OID: 3300005528
• Scaffold ID: Ga0068872_10146543
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1378
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F000852	Metagenome / Metatranscriptome	860	Y
F013414	Metagenome / Metatranscriptome	271	Y
F095358	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068872_101465431	F095358	N/A	ADGIGISMDLGDEIIDETIRDWMRDNDFLVALDNDGWLDDEEAEDE*
Ga0068872_101465432	F000441	GAGG	MQQTDLYINEQLQAAQKLLWSGSLHEVDEAHNIISNLIRDRMSNLSDKGN*
Ga0068872_101465433	F000852	GGA	MTTKREYLKSKGITVGARGRFSGAAKVALQEAEKNGVQFTAEKPASK*
Ga0068872_101465434	F013414	AGGCGG	MSKTPEIKVAQDIANLAEDHWFNPAIMARYLIDQPAYTVDRIIELIAQVIKWGGRRHEDELTPSGVYQSGTSSEGLFLAYELSKTLDKLGKTYVWENIKLPVDAKKKLAEMPRPEEQSYKYSWIHDTNNVSNQVQAVL*