Scaffold Ga0068872_10109668

Overview

Basic Information

• Taxon OID: 3300005528
• Scaffold ID: Ga0068872_10109668
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1640
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020680	Metagenome / Metatranscriptome	222	Y
F023832	Metagenome / Metatranscriptome	208	Y
F091428	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068872_101096681	F091428	AGGA	MGITLKMRREMVQVERDVMKGLREDLRKIRAAMNQSRLNIKMHQEVLVEERKLKRIVMEDNRALRARKQAIAMHARIEKMEAKLAALKVKAAA*
Ga0068872_101096683	F020680	GGAGG	MNTVNLAAASVADIKTLVSTGTVKHDDAIVRVDVVLARRIAEGKRARWTRLREWLVREQAQQECVNS*
Ga0068872_101096684	F023832	GGAG	MANPTRKMIEVYEMLKDGKPFKFDTLVSRLGCKPVTAMVLICALKRDCDANIETIRDGRKVESYQLHNAAAIASKMVGKTKAVKAPKVAKVAVLKTKTTVSRKPKAVAVDDGSIATLDVQEIDSDAELESLKAELGLSESYSE*