Scaffold Ga0068872

Basic Information
Taxon OID	3300005528 Open in IMG/M
Scaffold ID	Ga0068872_10104549 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005528 Open in IMG/M

Scaffold ID

Ga0068872_10104549 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	1689
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

1689

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location Name	USA: Ohio, Lake Erie
Coordinates	Lat. (^o)	41.69957	Long. (^o)	-83.2941	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Ohio, Lake Erie

Coordinates

Lat. (^o)

41.69957

Long. (^o)

-83.2941

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016494	Metagenome / Metatranscriptome	246	N
F019949	Metagenome / Metatranscriptome	226	N
F028417	Metagenome / Metatranscriptome	191	N
F031075	Metagenome / Metatranscriptome	183	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068872_101045491	F019949	N/A	AEDEAIKEILREELEKSIDKSVVFQLAFNTFKIEMQEIKLLRLVEKLLHTVDKMHNLSPLQKARKFSKIYELKQKIIQINLNWKISDSFHLKKYKILTLIDKIDVKEEYNSVANEEIYQQLINEVETAKRTNSTWQLDKELIIIKKID*
Ga0068872_101045492	F028417	AGAAG	MATNESLDKNQLITLMLQTIENFVPLETRPAPEGMAIYLYELKKEILRQDPKFKFINSYNDYTFRILTLLDYLDVSKEYDTESHGKTVHMICRETRDIKRIDPLWKINPTSIIEFINSTLSASARK*
Ga0068872_101045493	F016494	N/A	MSQKDSSGEEITVDGFTELGQLVKSTLQTVDELFPPKPEFSFEDMMVQFYTLKNKIKKIDSNWKFENTDISYMFEILKLLDAINIEEIPDLQQNAKVCQRLLHRVRIMRQVNPSWNLDIEGIVKFLYPTLNTQSS*
Ga0068872_101045494	F031075	N/A	MSQEKSTAVSEATNGKENSEDCGHEVNACTCPPSKEYEKYTRIRGLTHLIGLINFMPPFDGPISYGPLERIWNCKKQIREMDPNWLLADEITLLEHQVLNQIDVIDINVPWNSARNKLRYIDLYQTITKLRTIHPDWQMYLEDSKNHHFCKC

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0068872_10104549

Overview

Ecosystem & Geography

Associated Families

Sequences