Scaffold Ga0068872_10040913

Overview

Basic Information

• Taxon OID: 3300005528
• Scaffold ID: Ga0068872_10040913
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2951
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012013	Metagenome / Metatranscriptome	284	Y
F047645	Metagenome / Metatranscriptome	149	Y
F085211	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068872_100409131	F012013	N/A	YRDLNDILDRVTKLPVFPSLMWLWSFDIIREIFENNQYNDLAVNDYVDEAVPEGITLKQIFDKFWDDVDGFGLSMDSGGDIIEEVIRDWMRDNNFLVALDEDGWLND*
Ga0068872_100409136	F085211	GGAGG	LRNFLDDSIVEHKSRPPLRWIANWAGSIASKNMLELSYMEDEGLDKGFRYKYYGWLWDTFWPIYSKYGTFYRLNMDMSGPGWNDYDENGVPYWEKTGTIDPDYDHEQYHWDFVDEETGDAFKVINFGGKE*
Ga0068872_100409138	F047645	GGA	MSTNTICRHVYEYVYQDICPDCGKNTHEPDRELHKRLFKEYYESDAPKAYKCPVEGGTIRGWWSI*