Scaffold Ga0068872

Basic Information
Taxon OID	3300005528 Open in IMG/M
Scaffold ID	Ga0068872_10004296 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005528 Open in IMG/M

Scaffold ID

Ga0068872_10004296 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10835
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (76.92%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

10835

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (76.92%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location Name	USA: Ohio, Lake Erie
Coordinates	Lat. (^o)	41.69957	Long. (^o)	-83.2941	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Ohio, Lake Erie

Coordinates

Lat. (^o)

41.69957

Long. (^o)

-83.2941

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029387	Metagenome / Metatranscriptome	188	Y
F054788	Metagenome / Metatranscriptome	139	Y
F074818	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068872_1000429611	F074818	GGAG	MPIRSKAQQRAMYAAASGGGKTGIPKSVAREYIEATPKKAYADMPERAKRKPAMKRKSK*
Ga0068872_100042966	F054788	N/A	VAVTKAQLIALTRETMDAVASDRWSDATITTVLNSVYGDEWSNILNAQPYYTFAKRTVSTDSDGMVPFSALSSGAGDNQKNFYRVLSVSDGNVLYTQTRFQDVPLATTTNYLPTYPRLFYTAGQALQILPVAASTTLYVYVNYKPTSFSQLAGDSSVIDFPDGGELVIANEAGAMLLNKGGAESTAARVLREEAALQRAAMLDDLRRYTIQPTMMAYPDQKYDWSGG*
Ga0068872_100042967	F029387	GGAG	MARPKLADQQPGMAGGLNDVSDPSALQPNQLRRAINLRLTDYGAATKRGGTQRTHSTALGSLGPTPISNGFTFQQDNGTNQILVTVSDKMYYATYGTLPWTYTIVPSATLAPNVSPDFAQFRDAGGNDVVYIADGGLLNRWNGTTLTQNIAGTAGVTVLQVHNQRLWGCGATNYPDSIFYSSLNNGDDLGNAVAPAGGGQIIVRTFGDERIVGLASVNTSLLIFHRRGISRLTGYGQDDITAAPAGVTADVGTIAAKSIVANNNVAYFISERGLYRCNESEVAAVGTPEKPDPLLPIIRQLSSADFDGIRAVMNRATKELWITIPGYGCYQYHTVLDAWSGPWDGGYTDPNTTCLFETINSSGLPVVLKGDAEGWVSLCDAPGVYKDNVLASGGGGAPYTMIAQLHRMYCGDDAEAKALRWGYVTAQLNQTTNCVVEWETNESSGSYQLPVNNAGIWDITDTWDVADVWAYAVSNNYRIPMGGTGYYIDISIVDTGQALPVISRFQLETFALGRR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0068872_10004296

Overview

Ecosystem & Geography

Associated Families

Sequences