NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068876_10297246

Scaffold Ga0068876_10297246


Overview

Basic Information
Taxon OID3300005527 Open in IMG/M
Scaffold IDGa0068876_10297246 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)917
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002353Metagenome / Metatranscriptome567Y
F006051Metagenome / Metatranscriptome382Y

Sequences

Protein IDFamilyRBSSequence
Ga0068876_102972461F006051GAGMGRFADIIRCHILEEYMSSYMRVRGVDAMLVLRNENKWAMTGKYFDILFYDFLFDIFFV*
Ga0068876_102972462F002353N/AVVLWYFPVLVADVEVKEDGVFIRLRKEEVVCEDKDSDKEVLSSVSEPVAEEVSEIGAEVTVHLETIPEDLTFESGEAFSLERVDKVPMEELSSDSNGSGSVISSGDITSISLDTVLDLKLAS*

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