Scaffold Ga0068876_10247867

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10247867
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1022
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002387	Metagenome / Metatranscriptome	565	Y
F013184	Metagenome / Metatranscriptome	273	Y
F082666	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_102478671	F082666	AGGA	MIEQAEAIDTRLQNAVDLGISGIDIMHGELKILMLVAEQELANAQAIEDETEEAMDSMERKYWEGVLDAYTELYKMTYDLSFAIGARNE
Ga0068876_102478674	F013184	GAGG	MKSYDFVIKLAGSVMANNEQEAWDKINSHVDDLGNVESEQYDLHWPDVSWDMEYELC*
Ga0068876_102478675	F002387	N/A	EDVNQMVIDAVYQDIAEQLLEDWINNNLDEGQYYADKQFAEMSGDRFIQDEFNKFYNLKEGDEDYL*