Basic Information | |
---|---|
Taxon OID | 3300005527 Open in IMG/M |
Scaffold ID | Ga0068876_10222726 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1089 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom. |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Ohio, Lake Erie | |||||||
Coordinates | Lat. (o) | 41.69957 | Long. (o) | -83.2941 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F003291 | Metagenome / Metatranscriptome | 495 | Y |
F007113 | Metagenome / Metatranscriptome | 357 | Y |
F010916 | Metagenome / Metatranscriptome | 297 | Y |
F093862 | Metagenome | 106 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0068876_102227261 | F010916 | AGAAG | MSISKQIHTDLLDMVSKHDYSYMMSDSHNVWESGMVYEKHIKAKIHALCAIHREDAEALYNEVKAVAGPDYTDYDSNGYGLKYRVINQWFEMYIGLDTLAK* |
Ga0068876_102227262 | F007113 | N/A | MKLELTPEQLKTVEIALCELFNSDRWISGREESEIDKIAERAGYLLNIIEQHNKKK* |
Ga0068876_102227263 | F093862 | N/A | MSNIMTVQYESELQIIAIKKMLEAIYESPIRPRGRHSDRKKVLGGRWRKWAQNDIPWRKAETVSFYIINKTK* |
Ga0068876_102227264 | F003291 | N/A | MNMSYNTEKLVNVFSQDELAAVMTAVAGYVATKRKQGRSTGVEVKAFNKIVDALLASNYLNAVEVKPNSNAPMGSAEYKAWEAMYDSDVRAHS* |
⦗Top⦘ |