Scaffold Ga0068876_10222726

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10222726
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1089
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003291	Metagenome / Metatranscriptome	495	Y
F007113	Metagenome / Metatranscriptome	357	Y
F010916	Metagenome / Metatranscriptome	297	Y
F093862	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_102227261	F010916	AGAAG	MSISKQIHTDLLDMVSKHDYSYMMSDSHNVWESGMVYEKHIKAKIHALCAIHREDAEALYNEVKAVAGPDYTDYDSNGYGLKYRVINQWFEMYIGLDTLAK*
Ga0068876_102227262	F007113	N/A	MKLELTPEQLKTVEIALCELFNSDRWISGREESEIDKIAERAGYLLNIIEQHNKKK*
Ga0068876_102227263	F093862	N/A	MSNIMTVQYESELQIIAIKKMLEAIYESPIRPRGRHSDRKKVLGGRWRKWAQNDIPWRKAETVSFYIINKTK*
Ga0068876_102227264	F003291	N/A	MNMSYNTEKLVNVFSQDELAAVMTAVAGYVATKRKQGRSTGVEVKAFNKIVDALLASNYLNAVEVKPNSNAPMGSAEYKAWEAMYDSDVRAHS*